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21 results

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Page 1
Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions.
MacArthur S, Li XY, Li J, Brown JB, Chu HC, Zeng L, Grondona BP, Hechmer A, Simirenko L, Keränen SV, Knowles DW, Stapleton M, Bickel P, Biggin MD, Eisen MB. MacArthur S, et al. Among authors: keranen sv. Genome Biol. 2009;10(7):R80. doi: 10.1186/gb-2009-10-7-r80. Epub 2009 Jul 23. Genome Biol. 2009. PMID: 19627575 Free PMC article.
Three-dimensional morphology and gene expression in the Drosophila blastoderm at cellular resolution I: data acquisition pipeline.
Luengo Hendriks CL, Keränen SV, Fowlkes CC, Simirenko L, Weber GH, DePace AH, Henriquez C, Kaszuba DW, Hamann B, Eisen MB, Malik J, Sudar D, Biggin MD, Knowles DW. Luengo Hendriks CL, et al. Among authors: keranen sv. Genome Biol. 2006;7(12):R123. doi: 10.1186/gb-2006-7-12-r123. Genome Biol. 2006. PMID: 17184546 Free PMC article.
A quantitative spatiotemporal atlas of gene expression in the Drosophila blastoderm.
Fowlkes CC, Hendriks CL, Keränen SV, Weber GH, Rübel O, Huang MY, Chatoor S, DePace AH, Simirenko L, Henriquez C, Beaton A, Weiszmann R, Celniker S, Hamann B, Knowles DW, Biggin MD, Eisen MB, Malik J. Fowlkes CC, et al. Among authors: keranen sv. Cell. 2008 Apr 18;133(2):364-74. doi: 10.1016/j.cell.2008.01.053. Cell. 2008. PMID: 18423206 Free article.
Exploiting regulatory heterogeneity to systematically identify enhancers with high accuracy.
Arbel H, Basu S, Fisher WW, Hammonds AS, Wan KH, Park S, Weiszmann R, Booth BW, Keranen SV, Henriquez C, Shams Solari O, Bickel PJ, Biggin MD, Celniker SE, Brown JB. Arbel H, et al. Among authors: keranen sv. Proc Natl Acad Sci U S A. 2019 Jan 15;116(3):900-908. doi: 10.1073/pnas.1808833115. Epub 2018 Dec 31. Proc Natl Acad Sci U S A. 2019. PMID: 30598455 Free PMC article.
A conserved developmental patterning network produces quantitatively different output in multiple species of Drosophila.
Fowlkes CC, Eckenrode KB, Bragdon MD, Meyer M, Wunderlich Z, Simirenko L, Luengo Hendriks CL, Keränen SV, Henriquez C, Knowles DW, Biggin MD, Eisen MB, DePace AH. Fowlkes CC, et al. Among authors: keranen sv. PLoS Genet. 2011 Oct;7(10):e1002346. doi: 10.1371/journal.pgen.1002346. Epub 2011 Oct 27. PLoS Genet. 2011. PMID: 22046143 Free PMC article.
Integrating data clustering and visualization for the analysis of 3D gene expression data.
Rübel O, Weber GH, Huang MY, Bethel EW, Biggin MD, Fowlkes CC, Luengo Hendriks CL, Keränen SV, Eisen MB, Knowles DW, Malik J, Hagen H, Hamann B. Rübel O, et al. Among authors: keranen sv. IEEE/ACM Trans Comput Biol Bioinform. 2010 Jan-Mar;7(1):64-79. doi: 10.1109/TCBB.2008.49. IEEE/ACM Trans Comput Biol Bioinform. 2010. PMID: 20150669
Volumetric Semantic Segmentation using Pyramid Context Features.
Barron JT, Arbeláez P, Keränen SV, Biggin MD, Knowles DW, Malik J. Barron JT, et al. Among authors: keranen sv. Proc IEEE Int Conf Comput Vis. 2013 Dec;2013:3448-3455. doi: 10.1109/ICCV.2013.428. Proc IEEE Int Conf Comput Vis. 2013. PMID: 26029008 Free PMC article.
21 results