Schmid AK - Search Results

1

Prevalence of transcription promoters within archaeal operons and coding sequences.

Koide T, Reiss DJ, Bare JC, Pang WL, Facciotti MT, Schmid AK, Pan M, Marzolf B, Van PT, Lo FY, Pratap A, Deutsch EW, Peterson A, Martin D, Baliga NS. Koide T, et al. Among authors: schmid ak. Mol Syst Biol. 2009;5:285. doi: 10.1038/msb.2009.42. Epub 2009 Jun 16. Mol Syst Biol. 2009. PMID: 19536208 Free PMC article.

2

HspR is a global negative regulator of heat shock gene expression in Deinococcus radiodurans.

Schmid AK, Howell HA, Battista JR, Peterson SN, Lidstrom ME. Schmid AK, et al. Mol Microbiol. 2005 Mar;55(5):1579-90. doi: 10.1111/j.1365-2958.2005.04494.x. Mol Microbiol. 2005. PMID: 15720562 Free article.

3

The anatomy of microbial cell state transitions in response to oxygen.

Schmid AK, Reiss DJ, Kaur A, Pan M, King N, Van PT, Hohmann L, Martin DB, Baliga NS. Schmid AK, et al. Genome Res. 2007 Oct;17(10):1399-413. doi: 10.1101/gr.6728007. Epub 2007 Sep 4. Genome Res. 2007. PMID: 17785531 Free PMC article.

4

The Firegoose: two-way integration of diverse data from different bioinformatics web resources with desktop applications.

Bare JC, Shannon PT, Schmid AK, Baliga NS. Bare JC, et al. Among authors: schmid ak. BMC Bioinformatics. 2007 Nov 19;8:456. doi: 10.1186/1471-2105-8-456. BMC Bioinformatics. 2007. PMID: 18021453 Free PMC article.

5

A predictive model for transcriptional control of physiology in a free living cell.

Bonneau R, Facciotti MT, Reiss DJ, Schmid AK, Pan M, Kaur A, Thorsson V, Shannon P, Johnson MH, Bare JC, Longabaugh W, Vuthoori M, Whitehead K, Madar A, Suzuki L, Mori T, Chang DE, Diruggiero J, Johnson CH, Hood L, Baliga NS. Bonneau R, et al. Among authors: schmid ak. Cell. 2007 Dec 28;131(7):1354-65. doi: 10.1016/j.cell.2007.10.053. Cell. 2007. PMID: 18160043 Free article.

6

Halobacterium salinarum NRC-1 PeptideAtlas: toward strategies for targeted proteomics and improved proteome coverage.

Van PT, Schmid AK, King NL, Kaur A, Pan M, Whitehead K, Koide T, Facciotti MT, Goo YA, Deutsch EW, Reiss DJ, Mallick P, Baliga NS. Van PT, et al. Among authors: schmid ak. J Proteome Res. 2008 Sep;7(9):3755-64. doi: 10.1021/pr800031f. Epub 2008 Jul 25. J Proteome Res. 2008. PMID: 18652504 Free PMC article.

7

A single transcription factor regulates evolutionarily diverse but functionally linked metabolic pathways in response to nutrient availability.

Schmid AK, Reiss DJ, Pan M, Koide T, Baliga NS. Schmid AK, et al. Mol Syst Biol. 2009;5:282. doi: 10.1038/msb.2009.40. Epub 2009 Jun 16. Mol Syst Biol. 2009. PMID: 19536205 Free PMC article.

8

Two transcription factors are necessary for iron homeostasis in a salt-dwelling archaeon.

Schmid AK, Pan M, Sharma K, Baliga NS. Schmid AK, et al. Nucleic Acids Res. 2011 Apr;39(7):2519-33. doi: 10.1093/nar/gkq1211. Epub 2010 Nov 24. Nucleic Acids Res. 2011. PMID: 21109526 Free PMC article.

9

The RosR transcription factor is required for gene expression dynamics in response to extreme oxidative stress in a hypersaline-adapted archaeon.

Sharma K, Gillum N, Boyd JL, Schmid A. Sharma K, et al. BMC Genomics. 2012 Jul 30;13:351. doi: 10.1186/1471-2164-13-351. BMC Genomics. 2012. PMID: 22846541 Free PMC article.

10

Protein-DNA binding dynamics predict transcriptional response to nutrients in archaea.

Todor H, Sharma K, Pittman AM, Schmid AK. Todor H, et al. Among authors: schmid ak. Nucleic Acids Res. 2013 Oct;41(18):8546-58. doi: 10.1093/nar/gkt659. Epub 2013 Jul 26. Nucleic Acids Res. 2013. PMID: 23892291 Free PMC article.

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