Aoki ST - Search Results

1

Structure of rotavirus outer-layer protein VP7 bound with a neutralizing Fab.

Aoki ST, Settembre EC, Trask SD, Greenberg HB, Harrison SC, Dormitzer PR. Aoki ST, et al. Science. 2009 Jun 12;324(5933):1444-7. doi: 10.1126/science.1170481. Science. 2009. PMID: 19520960 Free PMC article.

2

Molecular interactions in rotavirus assembly and uncoating seen by high-resolution cryo-EM.

Chen JZ, Settembre EC, Aoki ST, Zhang X, Bellamy AR, Dormitzer PR, Harrison SC, Grigorieff N. Chen JZ, et al. Among authors: aoki st. Proc Natl Acad Sci U S A. 2009 Jun 30;106(26):10644-8. doi: 10.1073/pnas.0904024106. Epub 2009 Jun 1. Proc Natl Acad Sci U S A. 2009. PMID: 19487668 Free PMC article.

3

Cross-linking of rotavirus outer capsid protein VP7 by antibodies or disulfides inhibits viral entry.

Aoki ST, Trask SD, Coulson BS, Greenberg HB, Dormitzer PR, Harrison SC. Aoki ST, et al. J Virol. 2011 Oct;85(20):10509-17. doi: 10.1128/JVI.00234-11. Epub 2011 Aug 17. J Virol. 2011. PMID: 21849465 Free PMC article.

4

Accurate in silico predictions of modified RNA interactions to a prototypical RNA-binding protein with λ-dynamics.

Angelo M, Bhargava Y, Kierzek E, Kierzek R, Hayes R, Zhang W, Vilseck JZ, Aoki ST. Angelo M, et al. Among authors: aoki st. bioRxiv [Preprint]. 2024 Dec 11:2024.12.10.627848. doi: 10.1101/2024.12.10.627848. bioRxiv. 2024. PMID: 39713306 Free PMC article. Preprint.

5

An effective Caenorhabditis elegans CRISPR training module for high school and undergraduate summer research experiences in molecular biology.

Herrera Sandoval C, Borchers C, Aoki ST. Herrera Sandoval C, et al. Among authors: aoki st. Biochem Mol Biol Educ. 2024 Nov-Dec;52(6):656-665. doi: 10.1002/bmb.21856. Epub 2024 Jul 27. Biochem Mol Biol Educ. 2024. PMID: 39072870

6

A primer for junior trainees: Recognition of RNA modifications by RNA-binding proteins.

Angelo M, Bhargava Y, Aoki ST. Angelo M, et al. Among authors: aoki st. Biochem Mol Biol Educ. 2024 Nov-Dec;52(6):701-710. doi: 10.1002/bmb.21854. Epub 2024 Jul 22. Biochem Mol Biol Educ. 2024. PMID: 39037148 Review.

7

In silico λ-dynamics predicts protein binding specificities to modified RNAs.

Angelo M, Zhang W, Vilseck JZ, Aoki ST. Angelo M, et al. Among authors: aoki st. bioRxiv [Preprint]. 2024 Jan 27:2024.01.26.577511. doi: 10.1101/2024.01.26.577511. bioRxiv. 2024. PMID: 38328125 Free PMC article. Preprint.

8

An improved in vivo tethering assay with single molecule FISH reveals that a nematode Nanos enhances reporter expression and mRNA stability.

Doenier J, Lynch TR, Kimble J, Aoki ST. Doenier J, et al. Among authors: aoki st. RNA. 2021 Jun;27(6):643-652. doi: 10.1261/rna.078693.121. Epub 2021 Mar 16. RNA. 2021. PMID: 33727224 Free PMC article.

9

C. elegans germ granules require both assembly and localized regulators for mRNA repression.

Aoki ST, Lynch TR, Crittenden SL, Bingman CA, Wickens M, Kimble J. Aoki ST, et al. Nat Commun. 2021 Feb 12;12(1):996. doi: 10.1038/s41467-021-21278-1. Nat Commun. 2021. PMID: 33579952 Free PMC article.

10

An RNA-Binding Multimer Specifies Nematode Sperm Fate.

Aoki ST, Porter DF, Prasad A, Wickens M, Bingman CA, Kimble J. Aoki ST, et al. Cell Rep. 2018 Jun 26;23(13):3769-3775. doi: 10.1016/j.celrep.2018.05.095. Cell Rep. 2018. PMID: 29949762 Free PMC article.

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