Hooper SD - Search Results

1

jClust: a clustering and visualization toolbox.

Pavlopoulos GA, Moschopoulos CN, Hooper SD, Schneider R, Kossida S. Pavlopoulos GA, et al. Among authors: hooper sd. Bioinformatics. 2009 Aug 1;25(15):1994-6. doi: 10.1093/bioinformatics/btp330. Epub 2009 May 19. Bioinformatics. 2009. PMID: 19454618 Free PMC article.

2

OnTheFly: a tool for automated document-based text annotation, data linking and network generation.

Pavlopoulos GA, Pafilis E, Kuhn M, Hooper SD, Schneider R. Pavlopoulos GA, et al. Among authors: hooper sd. Bioinformatics. 2009 Apr 1;25(7):977-8. doi: 10.1093/bioinformatics/btp081. Epub 2009 Feb 17. Bioinformatics. 2009. PMID: 19223449 Free PMC article.

3

Medusa: A tool for exploring and clustering biological networks.

Pavlopoulos GA, Hooper SD, Sifrim A, Schneider R, Aerts J. Pavlopoulos GA, et al. Among authors: hooper sd. BMC Res Notes. 2011 Oct 6;4:384. doi: 10.1186/1756-0500-4-384. BMC Res Notes. 2011. PMID: 21978489 Free PMC article.

4

Medusa: a simple tool for interaction graph analysis.

Hooper SD, Bork P. Hooper SD, et al. Bioinformatics. 2005 Dec 15;21(24):4432-3. doi: 10.1093/bioinformatics/bti696. Epub 2005 Sep 27. Bioinformatics. 2005. PMID: 16188923

5

Estimating DNA coverage and abundance in metagenomes using a gamma approximation.

Hooper SD, Dalevi D, Pati A, Mavromatis K, Ivanova NN, Kyrpides NC. Hooper SD, et al. Bioinformatics. 2010 Feb 1;26(3):295-301. doi: 10.1093/bioinformatics/btp687. Epub 2009 Dec 14. Bioinformatics. 2010. PMID: 20008478 Free PMC article.

6

Identification of tightly regulated groups of genes during Drosophila melanogaster embryogenesis.

Hooper SD, Boué S, Krause R, Jensen LJ, Mason CE, Ghanim M, White KP, Furlong EE, Bork P. Hooper SD, et al. Mol Syst Biol. 2007;3:72. doi: 10.1038/msb4100112. Epub 2007 Jan 16. Mol Syst Biol. 2007. PMID: 17224916 Free PMC article.

7

STRING: known and predicted protein-protein associations, integrated and transferred across organisms.

von Mering C, Jensen LJ, Snel B, Hooper SD, Krupp M, Foglierini M, Jouffre N, Huynen MA, Bork P. von Mering C, et al. Among authors: hooper sd. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D433-7. doi: 10.1093/nar/gki005. Nucleic Acids Res. 2005. PMID: 15608232 Free PMC article.

8

Annotation of metagenome short reads using proxygenes.

Dalevi D, Ivanova NN, Mavromatis K, Hooper SD, Szeto E, Hugenholtz P, Kyrpides NC, Markowitz VM. Dalevi D, et al. Among authors: hooper sd. Bioinformatics. 2008 Aug 15;24(16):i7-13. doi: 10.1093/bioinformatics/btn276. Bioinformatics. 2008. PMID: 18689842 Free article.

9

Gene context analysis in the Integrated Microbial Genomes (IMG) data management system.

Mavromatis K, Chu K, Ivanova N, Hooper SD, Markowitz VM, Kyrpides NC. Mavromatis K, et al. Among authors: hooper sd. PLoS One. 2009 Nov 24;4(11):e7979. doi: 10.1371/journal.pone.0007979. PLoS One. 2009. PMID: 19956731 Free PMC article.

10

Environments shape the nucleotide composition of genomes.

Foerstner KU, von Mering C, Hooper SD, Bork P. Foerstner KU, et al. Among authors: hooper sd. EMBO Rep. 2005 Dec;6(12):1208-13. doi: 10.1038/sj.embor.7400538. EMBO Rep. 2005. PMID: 16200051 Free PMC article.

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