Sarai A - Search Results

1

Prediction of mono- and di-nucleotide-specific DNA-binding sites in proteins using neural networks.

Andrabi M, Mizuguchi K, Sarai A, Ahmad S. Andrabi M, et al. Among authors: sarai a. BMC Struct Biol. 2009 May 13;9:30. doi: 10.1186/1472-6807-9-30. BMC Struct Biol. 2009. PMID: 19439068 Free PMC article.

2

Moment-based prediction of DNA-binding proteins.

Ahmad S, Sarai A. Ahmad S, et al. Among authors: sarai a. J Mol Biol. 2004 Jul 30;341(1):65-71. doi: 10.1016/j.jmb.2004.05.058. J Mol Biol. 2004. PMID: 15312763 Review.

3

PSSM-based prediction of DNA binding sites in proteins.

Ahmad S, Sarai A. Ahmad S, et al. Among authors: sarai a. BMC Bioinformatics. 2005 Feb 19;6:33. doi: 10.1186/1471-2105-6-33. BMC Bioinformatics. 2005. PMID: 15720719 Free PMC article.

4

Protein-DNA interactions: structural, thermodynamic and clustering patterns of conserved residues in DNA-binding proteins.

Ahmad S, Keskin O, Sarai A, Nussinov R. Ahmad S, et al. Among authors: sarai a. Nucleic Acids Res. 2008 Oct;36(18):5922-32. doi: 10.1093/nar/gkn573. Epub 2008 Sep 18. Nucleic Acids Res. 2008. PMID: 18801847 Free PMC article.

5

Analysis of electric moments of RNA-binding proteins: implications for mechanism and prediction.

Ahmad S, Sarai A. Ahmad S, et al. Among authors: sarai a. BMC Struct Biol. 2011 Feb 1;11:8. doi: 10.1186/1472-6807-11-8. BMC Struct Biol. 2011. PMID: 21284850 Free PMC article.

6

Prediction of dinucleotide-specific RNA-binding sites in proteins.

Fernandez M, Kumagai Y, Standley DM, Sarai A, Mizuguchi K, Ahmad S. Fernandez M, et al. Among authors: sarai a. BMC Bioinformatics. 2011;12 Suppl 13(Suppl 13):S5. doi: 10.1186/1471-2105-12-S13-S5. Epub 2011 Nov 30. BMC Bioinformatics. 2011. PMID: 22373260 Free PMC article.

7

Real value prediction of solvent accessibility from amino acid sequence.

Ahmad S, Gromiha MM, Sarai A. Ahmad S, et al. Among authors: sarai a. Proteins. 2003 Mar 1;50(4):629-35. doi: 10.1002/prot.10328. Proteins. 2003. PMID: 12577269

8

RVP-net: online prediction of real valued accessible surface area of proteins from single sequences.

Ahmad S, Gromiha MM, Sarai A. Ahmad S, et al. Among authors: sarai a. Bioinformatics. 2003 Sep 22;19(14):1849-51. doi: 10.1093/bioinformatics/btg249. Bioinformatics. 2003. PMID: 14512359

9

Analysis and prediction of DNA-binding proteins and their binding residues based on composition, sequence and structural information.

Ahmad S, Gromiha MM, Sarai A. Ahmad S, et al. Among authors: sarai a. Bioinformatics. 2004 Mar 1;20(4):477-86. doi: 10.1093/bioinformatics/btg432. Epub 2004 Jan 22. Bioinformatics. 2004. PMID: 14990443

10

Dimensionality of amino acid space and solvent accessibility prediction with neural networks.

Araúzo-Bravo MJ, Ahmad S, Sarai A. Araúzo-Bravo MJ, et al. Among authors: sarai a. Comput Biol Chem. 2006 Apr;30(2):160-8. doi: 10.1016/j.compbiolchem.2005.12.003. Epub 2006 Mar 20. Comput Biol Chem. 2006. PMID: 16545617

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