De Smet R - Search Results

1

Reverse-engineering transcriptional modules from gene expression data.

Michoel T, De Smet R, Joshi A, Marchal K, Van de Peer Y. Michoel T, et al. Among authors: de smet r. Ann N Y Acad Sci. 2009 Mar;1158:36-43. doi: 10.1111/j.1749-6632.2008.03943.x. Ann N Y Acad Sci. 2009. PMID: 19348630

2

Module networks revisited: computational assessment and prioritization of model predictions.

Joshi A, De Smet R, Marchal K, Van de Peer Y, Michoel T. Joshi A, et al. Among authors: de smet r. Bioinformatics. 2009 Feb 15;25(4):490-6. doi: 10.1093/bioinformatics/btn658. Epub 2009 Jan 9. Bioinformatics. 2009. PMID: 19136553

3

Comparative analysis of module-based versus direct methods for reverse-engineering transcriptional regulatory networks.

Michoel T, De Smet R, Joshi A, Van de Peer Y, Marchal K. Michoel T, et al. Among authors: de smet r. BMC Syst Biol. 2009 May 7;3:49. doi: 10.1186/1752-0509-3-49. BMC Syst Biol. 2009. PMID: 19422680 Free PMC article.

4

An ensemble biclustering approach for querying gene expression compendia with experimental lists.

De Smet R, Marchal K. De Smet R, et al. Bioinformatics. 2011 Jul 15;27(14):1948-56. doi: 10.1093/bioinformatics/btr307. Epub 2011 May 18. Bioinformatics. 2011. PMID: 21593133

5

Advantages and limitations of current network inference methods.

De Smet R, Marchal K. De Smet R, et al. Nat Rev Microbiol. 2010 Oct;8(10):717-29. doi: 10.1038/nrmicro2419. Epub 2010 Aug 31. Nat Rev Microbiol. 2010. PMID: 20805835 Review.

6

Query-based biclustering of gene expression data using Probabilistic Relational Models.

Zhao H, Cloots L, Van den Bulcke T, Wu Y, De Smet R, Storms V, Meysman P, Engelen K, Marchal K. Zhao H, et al. Among authors: de smet r. BMC Bioinformatics. 2011 Feb 15;12 Suppl 1(Suppl 1):S37. doi: 10.1186/1471-2105-12-S1-S37. BMC Bioinformatics. 2011. PMID: 21342568 Free PMC article.

7

Redundancy and rewiring of genetic networks following genome-wide duplication events.

De Smet R, Van de Peer Y. De Smet R, et al. Curr Opin Plant Biol. 2012 Apr;15(2):168-76. doi: 10.1016/j.pbi.2012.01.003. Epub 2012 Feb 2. Curr Opin Plant Biol. 2012. PMID: 22305522 Review.

8

Convergent gene loss following gene and genome duplications creates single-copy families in flowering plants.

De Smet R, Adams KL, Vandepoele K, Van Montagu MC, Maere S, Van de Peer Y. De Smet R, et al. Proc Natl Acad Sci U S A. 2013 Feb 19;110(8):2898-903. doi: 10.1073/pnas.1300127110. Epub 2013 Feb 4. Proc Natl Acad Sci U S A. 2013. PMID: 23382190 Free PMC article.

9

Coordinated Functional Divergence of Genes after Genome Duplication in Arabidopsis thaliana.

De Smet R, Sabaghian E, Li Z, Saeys Y, Van de Peer Y. De Smet R, et al. Plant Cell. 2017 Nov;29(11):2786-2800. doi: 10.1105/tpc.17.00531. Epub 2017 Oct 25. Plant Cell. 2017. PMID: 29070508 Free PMC article.

10

Gene Duplicability of Core Genes Is Highly Consistent across All Angiosperms.

Li Z, Defoort J, Tasdighian S, Maere S, Van de Peer Y, De Smet R. Li Z, et al. Among authors: de smet r. Plant Cell. 2016 Feb;28(2):326-44. doi: 10.1105/tpc.15.00877. Epub 2016 Jan 7. Plant Cell. 2016. PMID: 26744215 Free PMC article.

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