Hesselberth JR - Search Results

1

Global mapping of protein-DNA interactions in vivo by digital genomic footprinting.

Hesselberth JR, Chen X, Zhang Z, Sabo PJ, Sandstrom R, Reynolds AP, Thurman RE, Neph S, Kuehn MS, Noble WS, Fields S, Stamatoyannopoulos JA. Hesselberth JR, et al. Nat Methods. 2009 Apr;6(4):283-9. doi: 10.1038/nmeth.1313. Epub 2009 Mar 22. Nat Methods. 2009. PMID: 19305407 Free PMC article.

2

A dynamic Bayesian network for identifying protein-binding footprints from single molecule-based sequencing data.

Chen X, Hoffman MM, Bilmes JA, Hesselberth JR, Noble WS. Chen X, et al. Among authors: hesselberth jr. Bioinformatics. 2010 Jun 15;26(12):i334-42. doi: 10.1093/bioinformatics/btq175. Bioinformatics. 2010. PMID: 20529925 Free PMC article.

3

A protein interaction network of the malaria parasite Plasmodium falciparum.

LaCount DJ, Vignali M, Chettier R, Phansalkar A, Bell R, Hesselberth JR, Schoenfeld LW, Ota I, Sahasrabudhe S, Kurschner C, Fields S, Hughes RE. LaCount DJ, et al. Among authors: hesselberth jr. Nature. 2005 Nov 3;438(7064):103-7. doi: 10.1038/nature04104. Nature. 2005. PMID: 16267556

4

Comparative analysis of Saccharomyces cerevisiae WW domains and their interacting proteins.

Hesselberth JR, Miller JP, Golob A, Stajich JE, Michaud GA, Fields S. Hesselberth JR, et al. Genome Biol. 2006;7(4):R30. doi: 10.1186/gb-2006-7-4-r30. Epub 2006 Apr 10. Genome Biol. 2006. PMID: 16606443 Free PMC article.

5

Genome-wide identification of spliced introns using a tiling microarray.

Zhang Z, Hesselberth JR, Fields S. Zhang Z, et al. Among authors: hesselberth jr. Genome Res. 2007 Apr;17(4):503-9. doi: 10.1101/gr.6049107. Epub 2007 Mar 9. Genome Res. 2007. PMID: 17351133 Free PMC article.

6

Capture and sequence analysis of RNAs with terminal 2',3'-cyclic phosphates.

Schutz K, Hesselberth JR, Fields S. Schutz K, et al. Among authors: hesselberth jr. RNA. 2010 Mar;16(3):621-31. doi: 10.1261/rna.1934910. Epub 2010 Jan 14. RNA. 2010. PMID: 20075163 Free PMC article.

7

High-throughput profiling of amino acids in strains of the Saccharomyces cerevisiae deletion collection.

Cooper SJ, Finney GL, Brown SL, Nelson SK, Hesselberth J, MacCoss MJ, Fields S. Cooper SJ, et al. Genome Res. 2010 Sep;20(9):1288-96. doi: 10.1101/gr.105825.110. Epub 2010 Jul 7. Genome Res. 2010. PMID: 20610602 Free PMC article.

8

Binding specificity of Toll-like receptor cytoplasmic domains.

Brown V, Brown RA, Ozinsky A, Hesselberth JR, Fields S. Brown V, et al. Among authors: hesselberth jr. Eur J Immunol. 2006 Mar;36(3):742-53. doi: 10.1002/eji.200535158. Eur J Immunol. 2006. PMID: 16482509 Free PMC article.

9

A homolog of lariat-debranching enzyme modulates turnover of branched RNA.

Garrey SM, Katolik A, Prekeris M, Li X, York K, Bernards S, Fields S, Zhao R, Damha MJ, Hesselberth JR. Garrey SM, et al. Among authors: hesselberth jr. RNA. 2014 Aug;20(8):1337-48. doi: 10.1261/rna.044602.114. Epub 2014 Jun 11. RNA. 2014. PMID: 24919400 Free PMC article.

10

Ribose-seq: global mapping of ribonucleotides embedded in genomic DNA.

Koh KD, Balachander S, Hesselberth JR, Storici F. Koh KD, et al. Among authors: hesselberth jr. Nat Methods. 2015 Mar;12(3):251-7, 3 p following 257. doi: 10.1038/nmeth.3259. Epub 2015 Jan 26. Nat Methods. 2015. PMID: 25622106 Free PMC article.

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