Knowles J - Search Results

1

Artefacts and biases affecting the evaluation of scoring functions on decoy sets for protein structure prediction.

Handl J, Knowles J, Lovell SC. Handl J, et al. Among authors: knowles j. Bioinformatics. 2009 May 15;25(10):1271-9. doi: 10.1093/bioinformatics/btp150. Epub 2009 Mar 17. Bioinformatics. 2009. PMID: 19297350 Free PMC article.

2

Computational cluster validation in post-genomic data analysis.

Handl J, Knowles J, Kell DB. Handl J, et al. Among authors: knowles j. Bioinformatics. 2005 Aug 1;21(15):3201-12. doi: 10.1093/bioinformatics/bti517. Epub 2005 May 24. Bioinformatics. 2005. PMID: 15914541 Review.

3

The dual role of fragments in fragment-assembly methods for de novo protein structure prediction.

Handl J, Knowles J, Vernon R, Baker D, Lovell SC. Handl J, et al. Among authors: knowles j. Proteins. 2012 Feb;80(2):490-504. doi: 10.1002/prot.23215. Epub 2011 Nov 17. Proteins. 2012. PMID: 22095594 Free PMC article.

4

Generating, Maintaining, and Exploiting Diversity in a Memetic Algorithm for Protein Structure Prediction.

Garza-Fabre M, Kandathil SM, Handl J, Knowles J, Lovell SC. Garza-Fabre M, et al. Among authors: knowles j. Evol Comput. 2016 Winter;24(4):577-607. doi: 10.1162/EVCO_a_00176. Epub 2016 Feb 23. Evol Comput. 2016. PMID: 26908350

5

Multiobjective optimization in bioinformatics and computational biology.

Handl J, Kell DB, Knowles J. Handl J, et al. Among authors: knowles j. IEEE/ACM Trans Comput Biol Bioinform. 2007 Apr-Jun;4(2):279-92. doi: 10.1109/TCBB.2007.070203. IEEE/ACM Trans Comput Biol Bioinform. 2007. PMID: 17473320 Free article. Review.

6

Ant-based clustering and topographic mapping.

Handl J, Knowles J, Dorigo M. Handl J, et al. Among authors: knowles j. Artif Life. 2006 Winter;12(1):35-61. doi: 10.1162/106454606775186400. Artif Life. 2006. PMID: 16393450

7

Predictive models for population performance on real biological fitness landscapes.

Rowe W, Wedge DC, Platt M, Kell DB, Knowles J. Rowe W, et al. Among authors: knowles j. Bioinformatics. 2010 Sep 1;26(17):2145-52. doi: 10.1093/bioinformatics/btq353. Epub 2010 Jul 17. Bioinformatics. 2010. PMID: 20639542

8

MUSCLE: automated multi-objective evolutionary optimization of targeted LC-MS/MS analysis.

Bradbury J, Genta-Jouve G, Allwood JW, Dunn WB, Goodacre R, Knowles JD, He S, Viant MR. Bradbury J, et al. Among authors: knowles jd. Bioinformatics. 2015 Mar 15;31(6):975-7. doi: 10.1093/bioinformatics/btu740. Epub 2014 Nov 11. Bioinformatics. 2015. PMID: 25388146 Free PMC article.

9

Exploiting genomic knowledge in optimising molecular breeding programmes: algorithms from evolutionary computing.

O'Hagan S, Knowles J, Kell DB. O'Hagan S, et al. Among authors: knowles j. PLoS One. 2012;7(11):e48862. doi: 10.1371/journal.pone.0048862. Epub 2012 Nov 21. PLoS One. 2012. PMID: 23185279 Free PMC article.

10

Analysis of a complete DNA-protein affinity landscape.

Rowe W, Platt M, Wedge DC, Day PJ, Kell DB, Knowles J. Rowe W, et al. Among authors: knowles j. J R Soc Interface. 2010 Mar 6;7(44):397-408. doi: 10.1098/rsif.2009.0193. Epub 2009 Jul 22. J R Soc Interface. 2010. PMID: 19625306 Free PMC article.

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