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Survey-based naming conventions for use in OBO Foundry ontology development.
Schober D, Smith B, Lewis SE, Kusnierczyk W, Lomax J, Mungall C, Taylor CF, Rocca-Serra P, Sansone SA. Schober D, et al. Among authors: mungall c. BMC Bioinformatics. 2009 Apr 27;10:125. doi: 10.1186/1471-2105-10-125. BMC Bioinformatics. 2009. PMID: 19397794 Free PMC article.
Relations in biomedical ontologies.
Smith B, Ceusters W, Klagges B, Köhler J, Kumar A, Lomax J, Mungall C, Neuhaus F, Rector AL, Rosse C. Smith B, et al. Among authors: mungall c. Genome Biol. 2005;6(5):R46. doi: 10.1186/gb-2005-6-5-r46. Epub 2005 Apr 28. Genome Biol. 2005. PMID: 15892874 Free PMC article.
Novel sequence feature variant type analysis of the HLA genetic association in systemic sclerosis.
Karp DR, Marthandan N, Marsh SG, Ahn C, Arnett FC, Deluca DS, Diehl AD, Dunivin R, Eilbeck K, Feolo M, Guidry PA, Helmberg W, Lewis S, Mayes MD, Mungall C, Natale DA, Peters B, Petersdorf E, Reveille JD, Smith B, Thomson G, Waller MJ, Scheuermann RH. Karp DR, et al. Among authors: mungall c. Hum Mol Genet. 2010 Feb 15;19(4):707-19. doi: 10.1093/hmg/ddp521. Epub 2009 Nov 18. Hum Mol Genet. 2010. PMID: 19933168 Free PMC article.
The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics.
Cooper L, Meier A, Laporte MA, Elser JL, Mungall C, Sinn BT, Cavaliere D, Carbon S, Dunn NA, Smith B, Qu B, Preece J, Zhang E, Todorovic S, Gkoutos G, Doonan JH, Stevenson DW, Arnaud E, Jaiswal P. Cooper L, et al. Among authors: mungall c. Nucleic Acids Res. 2018 Jan 4;46(D1):D1168-D1180. doi: 10.1093/nar/gkx1152. Nucleic Acids Res. 2018. PMID: 29186578 Free PMC article.
AmiGO: online access to ontology and annotation data.
Carbon S, Ireland A, Mungall CJ, Shu S, Marshall B, Lewis S; AmiGO Hub; Web Presence Working Group. Carbon S, et al. Bioinformatics. 2009 Jan 15;25(2):288-9. doi: 10.1093/bioinformatics/btn615. Epub 2008 Nov 25. Bioinformatics. 2009. PMID: 19033274 Free PMC article.
ECO, the Evidence & Conclusion Ontology: community standard for evidence information.
Giglio M, Tauber R, Nadendla S, Munro J, Olley D, Ball S, Mitraka E, Schriml LM, Gaudet P, Hobbs ET, Erill I, Siegele DA, Hu JC, Mungall C, Chibucos MC. Giglio M, et al. Among authors: mungall c. Nucleic Acids Res. 2019 Jan 8;47(D1):D1186-D1194. doi: 10.1093/nar/gky1036. Nucleic Acids Res. 2019. PMID: 30407590 Free PMC article.
Big data and other challenges in the quest for orthologs.
Sonnhammer EL, Gabaldón T, Sousa da Silva AW, Martin M, Robinson-Rechavi M, Boeckmann B, Thomas PD, Dessimoz C; Quest for Orthologs consortium. Sonnhammer EL, et al. Bioinformatics. 2014 Nov 1;30(21):2993-8. doi: 10.1093/bioinformatics/btu492. Epub 2014 Jul 26. Bioinformatics. 2014. PMID: 25064571 Free PMC article.
219 results