DeBartolo J - Search Results

1

Mimicking the folding pathway to improve homology-free protein structure prediction.

DeBartolo J, Colubri A, Jha AK, Fitzgerald JE, Freed KF, Sosnick TR. DeBartolo J, et al. Proc Natl Acad Sci U S A. 2009 Mar 10;106(10):3734-9. doi: 10.1073/pnas.0811363106. Epub 2009 Feb 23. Proc Natl Acad Sci U S A. 2009. PMID: 19237560 Free PMC article.

2

Protein structure prediction enhanced with evolutionary diversity: SPEED.

DeBartolo J, Hocky G, Wilde M, Xu J, Freed KF, Sosnick TR. DeBartolo J, et al. Protein Sci. 2010 Mar;19(3):520-34. doi: 10.1002/pro.330. Protein Sci. 2010. PMID: 20066664 Free PMC article.

3

A probabilistic and continuous model of protein conformational space for template-free modeling.

Zhao F, Peng J, Debartolo J, Freed KF, Sosnick TR, Xu J. Zhao F, et al. Among authors: debartolo j. J Comput Biol. 2010 Jun;17(6):783-98. doi: 10.1089/cmb.2009.0235. J Comput Biol. 2010. PMID: 20583926 Free PMC article.

4

Automated real-space refinement of protein structures using a realistic backbone move set.

Haddadian EJ, Gong H, Jha AK, Yang X, Debartolo J, Hinshaw JR, Rice PA, Sosnick TR, Freed KF. Haddadian EJ, et al. Among authors: debartolo j. Biophys J. 2011 Aug 17;101(4):899-909. doi: 10.1016/j.bpj.2011.06.063. Biophys J. 2011. PMID: 21843481 Free PMC article.

5

A Probabilistic Graphical Model for Ab Initio Folding.

Zhao F, Peng J, Debartolo J, Freed KF, Sosnick TR, Xu J. Zhao F, et al. Among authors: debartolo j. Res Comput Mol Biol. 2009;5541:59-73. doi: 10.1007/978-3-642-02008-7_5. Res Comput Mol Biol. 2009. PMID: 23459639 Free PMC article.

6

Predictive Bcl-2 family binding models rooted in experiment or structure.

DeBartolo J, Dutta S, Reich L, Keating AE. DeBartolo J, et al. J Mol Biol. 2012 Sep 7;422(1):124-44. doi: 10.1016/j.jmb.2012.05.022. Epub 2012 May 19. J Mol Biol. 2012. PMID: 22617328 Free PMC article.

7

Genome-wide prediction and validation of peptides that bind human prosurvival Bcl-2 proteins.

DeBartolo J, Taipale M, Keating AE. DeBartolo J, et al. PLoS Comput Biol. 2014 Jun 26;10(6):e1003693. doi: 10.1371/journal.pcbi.1003693. eCollection 2014 Jun. PLoS Comput Biol. 2014. PMID: 24967846 Free PMC article.

8

Combining random mutagenesis, structure-guided design and next-generation sequencing to mitigate polyreactivity of an anti-IL-21R antibody.

Campbell SM, DeBartolo J, Apgar JR, Mosyak L, McManus V, Beyer S, Bennett EM, Lambert M, Cunningham O. Campbell SM, et al. Among authors: debartolo j. MAbs. 2021 Jan-Dec;13(1):1883239. doi: 10.1080/19420862.2021.1883239. MAbs. 2021. PMID: 33557673 Free PMC article.

9

Shape Recovery with Concomitant Mechanical Strengthening of Amphiphilic Shape Memory Polymers in Warm Water.

Zhang B, DeBartolo JE, Song J. Zhang B, et al. Among authors: debartolo je. ACS Appl Mater Interfaces. 2017 Feb 8;9(5):4450-4456. doi: 10.1021/acsami.6b14167. Epub 2017 Jan 26. ACS Appl Mater Interfaces. 2017. PMID: 28125208 Free article.

10

Diabetic Wounds Exhibit Decreased Ym1 and Arginase Expression with Increased Expression of IL-17 and IL-20.

Finley PJ, DeClue CE, Sell SA, DeBartolo JM, Shornick LP. Finley PJ, et al. Among authors: debartolo jm. Adv Wound Care (New Rochelle). 2016 Nov 1;5(11):486-494. doi: 10.1089/wound.2015.0676. Adv Wound Care (New Rochelle). 2016. PMID: 27867753 Free PMC article.

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