Sze SH - Search Results

1

Querying pathways in protein interaction networks based on hidden Markov models.

Qian X, Sze SH, Yoon BJ. Qian X, et al. Among authors: sze sh. J Comput Biol. 2009 Feb;16(2):145-57. doi: 10.1089/cmb.2008.02TT. J Comput Biol. 2009. PMID: 19193142 Free PMC article.

2

A polynomial time solvable formulation of multiple sequence alignment.

Sze SH, Lu Y, Yang Q. Sze SH, et al. J Comput Biol. 2006 Mar;13(2):309-19. doi: 10.1089/cmb.2006.13.309. J Comput Biol. 2006. PMID: 16597242

3

Path matching and graph matching in biological networks.

Yang Q, Sze SH. Yang Q, et al. Among authors: sze sh. J Comput Biol. 2007 Jan-Feb;14(1):56-67. doi: 10.1089/cmb.2006.0076. J Comput Biol. 2007. PMID: 17381346

4

Predicting protein folding pathways at the mesoscopic level based on native interactions between secondary structure elements.

Yang Q, Sze SH. Yang Q, et al. Among authors: sze sh. BMC Bioinformatics. 2008 Jul 23;9:320. doi: 10.1186/1471-2105-9-320. BMC Bioinformatics. 2008. PMID: 18651953 Free PMC article.

5

Multiple sequence alignment based on profile alignment of intermediate sequences.

Lu Y, Sze SH. Lu Y, et al. Among authors: sze sh. J Comput Biol. 2008 Sep;15(7):767-77. doi: 10.1089/cmb.2007.0132. J Comput Biol. 2008. PMID: 18662101

6

Improving accuracy of multiple sequence alignment algorithms based on alignment of neighboring residues.

Lu Y, Sze SH. Lu Y, et al. Among authors: sze sh. Nucleic Acids Res. 2009 Feb;37(2):463-72. doi: 10.1093/nar/gkn945. Epub 2008 Dec 4. Nucleic Acids Res. 2009. PMID: 19056820 Free PMC article.

7

Identifying gene clusters within localized regions in multiple genomes.

Yang Q, Yi G, Zhang F, Thon MR, Sze SH. Yang Q, et al. Among authors: sze sh. J Comput Biol. 2010 May;17(5):657-68. doi: 10.1089/cmb.2009.0116. J Comput Biol. 2010. PMID: 20500020

8

Motif finding in DNA sequences based on skipping nonconserved positions in background Markov chains.

Zhao X, Sze SH. Zhao X, et al. Among authors: sze sh. J Comput Biol. 2011 May;18(5):759-70. doi: 10.1089/cmb.2010.0197. J Comput Biol. 2011. PMID: 21554019

9

Supervised protein family classification and new family construction.

Yi G, Thon MR, Sze SH. Yi G, et al. Among authors: sze sh. J Comput Biol. 2012 Aug;19(8):957-67. doi: 10.1089/cmb.2011.0044. J Comput Biol. 2012. PMID: 22876787 Free PMC article.

10

Identifying complexes from protein interaction networks according to different types of neighborhood density.

Fan JH, Chen J, Sze SH. Fan JH, et al. Among authors: sze sh. J Comput Biol. 2012 Dec;19(12):1284-94. doi: 10.1089/cmb.2012.0195. J Comput Biol. 2012. PMID: 23210476 Free PMC article.

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