Ferkinghoff-Borg J - Search Results

1

Information theoretical quantification of cooperativity in signalling complexes.

Lenaerts T, Ferkinghoff-Borg J, Schymkowitz J, Rousseau F. Lenaerts T, et al. BMC Syst Biol. 2009 Jan 16;3:9. doi: 10.1186/1752-0509-3-9. BMC Syst Biol. 2009. PMID: 19149897 Free PMC article.

2

Quantifying information transfer by protein domains: analysis of the Fyn SH2 domain structure.

Lenaerts T, Ferkinghoff-Borg J, Stricher F, Serrano L, Schymkowitz JW, Rousseau F. Lenaerts T, et al. BMC Struct Biol. 2008 Oct 8;8:43. doi: 10.1186/1472-6807-8-43. BMC Struct Biol. 2008. PMID: 18842137 Free PMC article.

3

SNPeffect: a database mapping molecular phenotypic effects of human non-synonymous coding SNPs.

Reumers J, Schymkowitz J, Ferkinghoff-Borg J, Stricher F, Serrano L, Rousseau F. Reumers J, et al. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D527-32. doi: 10.1093/nar/gki086. Nucleic Acids Res. 2005. PMID: 15608254 Free PMC article.

4

Recognizing and defining true Ras binding domains II: in silico prediction based on homology modelling and energy calculations.

Kiel C, Wohlgemuth S, Rousseau F, Schymkowitz J, Ferkinghoff-Borg J, Wittinghofer F, Serrano L. Kiel C, et al. J Mol Biol. 2005 May 6;348(3):759-75. doi: 10.1016/j.jmb.2005.02.046. J Mol Biol. 2005. PMID: 15826669

5

Genome-wide prediction of SH2 domain targets using structural information and the FoldX algorithm.

Sánchez IE, Beltrao P, Stricher F, Schymkowitz J, Ferkinghoff-Borg J, Rousseau F, Serrano L. Sánchez IE, et al. PLoS Comput Biol. 2008 Apr 4;4(4):e1000052. doi: 10.1371/journal.pcbi.1000052. PLoS Comput Biol. 2008. PMID: 18389064 Free PMC article.

6

Prediction of water and metal binding sites and their affinities by using the Fold-X force field.

Schymkowitz JW, Rousseau F, Martins IC, Ferkinghoff-Borg J, Stricher F, Serrano L. Schymkowitz JW, et al. Proc Natl Acad Sci U S A. 2005 Jul 19;102(29):10147-52. doi: 10.1073/pnas.0501980102. Epub 2005 Jul 8. Proc Natl Acad Sci U S A. 2005. PMID: 16006526 Free PMC article.

7

SmartCell, a framework to simulate cellular processes that combines stochastic approximation with diffusion and localisation: analysis of simple networks.

Ander M, Beltrao P, Di Ventura B, Ferkinghoff-Borg J, Foglierini M, Kaplan A, Lemerle C, Tomás-Oliveira I, Serrano L. Ander M, et al. Syst Biol (Stevenage). 2004 Jun;1(1):129-38. doi: 10.1049/sb:20045017. Syst Biol (Stevenage). 2004. PMID: 17052123

8

Computational Redesign of Thioredoxin Is Hypersensitive toward Minor Conformational Changes in the Backbone Template.

Johansson KE, Tidemand Johansen N, Christensen S, Horowitz S, Bardwell JCA, Olsen JG, Willemoës M, Lindorff-Larsen K, Ferkinghoff-Borg J, Hamelryck T, Winther JR. Johansson KE, et al. Among authors: ferkinghoff borg j. J Mol Biol. 2016 Oct 23;428(21):4361-4377. doi: 10.1016/j.jmb.2016.09.013. Epub 2016 Sep 20. J Mol Biol. 2016. PMID: 27659562 Free PMC article.

9

Equilibrium simulations of proteins using molecular fragment replacement and NMR chemical shifts.

Boomsma W, Tian P, Frellsen J, Ferkinghoff-Borg J, Hamelryck T, Lindorff-Larsen K, Vendruscolo M. Boomsma W, et al. Among authors: ferkinghoff borg j. Proc Natl Acad Sci U S A. 2014 Sep 23;111(38):13852-7. doi: 10.1073/pnas.1404948111. Epub 2014 Sep 5. Proc Natl Acad Sci U S A. 2014. PMID: 25192938 Free PMC article.

10

A generative, probabilistic model of local protein structure.

Boomsma W, Mardia KV, Taylor CC, Ferkinghoff-Borg J, Krogh A, Hamelryck T. Boomsma W, et al. Proc Natl Acad Sci U S A. 2008 Jul 1;105(26):8932-7. doi: 10.1073/pnas.0801715105. Epub 2008 Jun 25. Proc Natl Acad Sci U S A. 2008. PMID: 18579771 Free PMC article.

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