Zeng JM - Search Results

1

A HAUSDORFF-BASED NOE ASSIGNMENT ALGORITHM USING PROTEIN BACKBONE DETERMINED FROM RESIDUAL DIPOLAR COUPLINGS AND ROTAMER PATTERNS.

Zeng JM, Tripathy C, Zhou P, Donald BR. Zeng JM, et al. Comput Syst Bioinformatics Conf. 2008;2008:169-181. Comput Syst Bioinformatics Conf. 2008. PMID: 19122773 Free PMC article.

2

A Hausdorff-based NOE assignment algorithm using protein backbone determined from residual dipolar couplings and rotamer patterns.

Zeng J, Tripathy C, Zhou P, Donald BR. Zeng J, et al. Comput Syst Bioinformatics Conf. 2008;7:169-81. Comput Syst Bioinformatics Conf. 2008. PMID: 19642278 Free article.

3

Protein side-chain resonance assignment and NOE assignment using RDC-defined backbones without TOCSY data.

Zeng J, Zhou P, Donald BR. Zeng J, et al. J Biomol NMR. 2011 Aug;50(4):371-95. doi: 10.1007/s10858-011-9522-4. Epub 2011 Jun 25. J Biomol NMR. 2011. PMID: 21706248 Free PMC article.

4

A Bayesian approach for determining protein side-chain rotamer conformations using unassigned NOE data.

Zeng J, Roberts KE, Zhou P, Donald BR. Zeng J, et al. J Comput Biol. 2011 Nov;18(11):1661-79. doi: 10.1089/cmb.2011.0172. Epub 2011 Oct 4. J Comput Biol. 2011. PMID: 21970619 Free PMC article.

5

High-resolution protein structure determination starting with a global fold calculated from exact solutions to the RDC equations.

Zeng J, Boyles J, Tripathy C, Wang L, Yan A, Zhou P, Donald BR. Zeng J, et al. J Biomol NMR. 2009 Nov;45(3):265-81. doi: 10.1007/s10858-009-9366-3. Epub 2009 Aug 27. J Biomol NMR. 2009. PMID: 19711185 Free PMC article.

6

Protein loop closure using orientational restraints from NMR data.

Tripathy C, Zeng J, Zhou P, Donald BR. Tripathy C, et al. Proteins. 2012 Feb;80(2):433-53. doi: 10.1002/prot.23207. Epub 2011 Dec 13. Proteins. 2012. PMID: 22161780 Free PMC article.

7

HASH: a program to accurately predict protein Hα shifts from neighboring backbone shifts.

Zeng J, Zhou P, Donald BR. Zeng J, et al. J Biomol NMR. 2013 Jan;55(1):105-18. doi: 10.1007/s10858-012-9693-7. Epub 2012 Dec 16. J Biomol NMR. 2013. PMID: 23242797 Free PMC article.

8

An efficient parallel algorithm for accelerating computational protein design.

Zhou Y, Xu W, Donald BR, Zeng J. Zhou Y, et al. Bioinformatics. 2014 Jun 15;30(12):i255-i263. doi: 10.1093/bioinformatics/btu264. Bioinformatics. 2014. PMID: 24931991 Free PMC article.

9

cOSPREY: A Cloud-Based Distributed Algorithm for Large-Scale Computational Protein Design.

Pan Y, Dong Y, Zhou J, Hallen M, Donald BR, Zeng J, Xu W. Pan Y, et al. J Comput Biol. 2016 Sep;23(9):737-49. doi: 10.1089/cmb.2015.0234. Epub 2016 May 6. J Comput Biol. 2016. PMID: 27154509 Free PMC article.

10

Parallel Computational Protein Design.

Zhou Y, Donald BR, Zeng J. Zhou Y, et al. Methods Mol Biol. 2017;1529:265-277. doi: 10.1007/978-1-4939-6637-0_13. Methods Mol Biol. 2017. PMID: 27914056 Free PMC article.

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