Szallasi Z - Search Results

1

A large-scale analysis of tissue-specific pathology and gene expression of human disease genes and complexes.

Lage K, Hansen NT, Karlberg EO, Eklund AC, Roque FS, Donahoe PK, Szallasi Z, Jensen TS, Brunak S. Lage K, et al. Among authors: szallasi z. Proc Natl Acad Sci U S A. 2008 Dec 30;105(52):20870-5. doi: 10.1073/pnas.0810772105. Epub 2008 Dec 22. Proc Natl Acad Sci U S A. 2008. PMID: 19104045 Free PMC article.

2

Biasogram: visualization of confounding technical bias in gene expression data.

Krzystanek M, Szallasi Z, Eklund AC. Krzystanek M, et al. Among authors: szallasi z. PLoS One. 2013 Apr 16;8(4):e61872. doi: 10.1371/journal.pone.0061872. Print 2013. PLoS One. 2013. PMID: 23613961 Free PMC article.

3

Optimization of the BLASTN substitution matrix for prediction of non-specific DNA microarray hybridization.

Eklund AC, Friis P, Wernersson R, Szallasi Z. Eklund AC, et al. Among authors: szallasi z. Nucleic Acids Res. 2010 Mar;38(4):e27. doi: 10.1093/nar/gkp1116. Epub 2009 Dec 6. Nucleic Acids Res. 2010. PMID: 19969549 Free PMC article.

4

Minimising immunohistochemical false negative ER classification using a complementary 23 gene expression signature of ER status.

Li Q, Eklund AC, Juul N, Haibe-Kains B, Workman CT, Richardson AL, Szallasi Z, Swanton C. Li Q, et al. Among authors: szallasi z. PLoS One. 2010 Dec 1;5(12):e15031. doi: 10.1371/journal.pone.0015031. PLoS One. 2010. PMID: 21152022 Free PMC article.

5

Consistent metagenes from cancer expression profiles yield agent specific predictors of chemotherapy response.

Li Q, Eklund AC, Birkbak NJ, Desmedt C, Haibe-Kains B, Sotiriou C, Symmans WF, Pusztai L, Brunak S, Richardson AL, Szallasi Z. Li Q, et al. Among authors: szallasi z. BMC Bioinformatics. 2011 Jul 28;12:310. doi: 10.1186/1471-2105-12-310. BMC Bioinformatics. 2011. PMID: 21798043 Free PMC article.

6

Jetset: selecting the optimal microarray probe set to represent a gene.

Li Q, Birkbak NJ, Gyorffy B, Szallasi Z, Eklund AC. Li Q, et al. Among authors: szallasi z. BMC Bioinformatics. 2011 Dec 15;12:474. doi: 10.1186/1471-2105-12-474. BMC Bioinformatics. 2011. PMID: 22172014 Free PMC article.

7

Computational prediction of neoantigens: do we need more data or new approaches?

Eklund AC, Szallasi Z. Eklund AC, et al. Among authors: szallasi z. Ann Oncol. 2018 Apr 1;29(4):799-801. doi: 10.1093/annonc/mdy070. Ann Oncol. 2018. PMID: 29481589 Free article. No abstract available.

8

Correction of technical bias in clinical microarray data improves concordance with known biological information.

Eklund AC, Szallasi Z. Eklund AC, et al. Among authors: szallasi z. Genome Biol. 2008;9(2):R26. doi: 10.1186/gb-2008-9-2-r26. Epub 2008 Feb 4. Genome Biol. 2008. PMID: 18248669 Free PMC article.

9

Tumor mutation burden forecasts outcome in ovarian cancer with BRCA1 or BRCA2 mutations.

Birkbak NJ, Kochupurakkal B, Izarzugaza JM, Eklund AC, Li Y, Liu J, Szallasi Z, Matulonis UA, Richardson AL, Iglehart JD, Wang ZC. Birkbak NJ, et al. Among authors: szallasi z. PLoS One. 2013 Nov 12;8(11):e80023. doi: 10.1371/journal.pone.0080023. eCollection 2013. PLoS One. 2013. PMID: 24265793 Free PMC article.

10

TumorTracer: a method to identify the tissue of origin from the somatic mutations of a tumor specimen.

Marquard AM, Birkbak NJ, Thomas CE, Favero F, Krzystanek M, Lefebvre C, Ferté C, Jamal-Hanjani M, Wilson GA, Shafi S, Swanton C, André F, Szallasi Z, Eklund AC. Marquard AM, et al. Among authors: szallasi z. BMC Med Genomics. 2015 Oct 1;8:58. doi: 10.1186/s12920-015-0130-0. BMC Med Genomics. 2015. PMID: 26429708 Free PMC article.

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