Longabaugh W - Search Results

1

Developmental gene regulatory networks in the zebrafish embryo.

Chan TM, Longabaugh W, Bolouri H, Chen HL, Tseng WF, Chao CH, Jang TH, Lin YI, Hung SC, Wang HD, Yuh CH. Chan TM, et al. Among authors: longabaugh w. Biochim Biophys Acta. 2009 Apr;1789(4):279-98. doi: 10.1016/j.bbagrm.2008.09.005. Epub 2008 Oct 8. Biochim Biophys Acta. 2009. PMID: 18992377 Review.

2

Visualization, documentation, analysis, and communication of large-scale gene regulatory networks.

Longabaugh WJ, Davidson EH, Bolouri H. Longabaugh WJ, et al. Biochim Biophys Acta. 2009 Apr;1789(4):363-74. doi: 10.1016/j.bbagrm.2008.07.014. Epub 2008 Aug 6. Biochim Biophys Acta. 2009. PMID: 18757046 Free PMC article. Review.

3

Computational representation of developmental genetic regulatory networks.

Longabaugh WJ, Davidson EH, Bolouri H. Longabaugh WJ, et al. Dev Biol. 2005 Jul 1;283(1):1-16. doi: 10.1016/j.ydbio.2005.04.023. Dev Biol. 2005. PMID: 15907831 Free article. Review.

4

Understanding the dynamic behavior of genetic regulatory networks by functional decomposition.

Longabaugh W, Bolouri H. Longabaugh W, et al. Curr Genomics. 2006 Nov;7(6):333-41. doi: 10.2174/138920206778948718. Curr Genomics. 2006. PMID: 18079985 Free PMC article.

5

A gene regulatory network armature for T lymphocyte specification.

Georgescu C, Longabaugh WJ, Scripture-Adams DD, David-Fung ES, Yui MA, Zarnegar MA, Bolouri H, Rothenberg EV. Georgescu C, et al. Proc Natl Acad Sci U S A. 2008 Dec 23;105(51):20100-5. doi: 10.1073/pnas.0806501105. Epub 2008 Dec 22. Proc Natl Acad Sci U S A. 2008. PMID: 19104054 Free PMC article.

6

Systematic comparison of sea urchin and sea star developmental gene regulatory networks explains how novelty is incorporated in early development.

Cary GA, McCauley BS, Zueva O, Pattinato J, Longabaugh W, Hinman VF. Cary GA, et al. Among authors: longabaugh w. Nat Commun. 2020 Dec 4;11(1):6235. doi: 10.1038/s41467-020-20023-4. Nat Commun. 2020. PMID: 33277483 Free PMC article.

7

BioTapestry: a tool to visualize the dynamic properties of gene regulatory networks.

Longabaugh WJ. Longabaugh WJ. Methods Mol Biol. 2012;786:359-94. doi: 10.1007/978-1-61779-292-2_21. Methods Mol Biol. 2012. PMID: 21938637

8

Absolute Quantification of Transcription Factors Reveals Principles of Gene Regulation in Erythropoiesis.

Gillespie MA, Palii CG, Sanchez-Taltavull D, Shannon P, Longabaugh WJR, Downes DJ, Sivaraman K, Espinoza HM, Hughes JR, Price ND, Perkins TJ, Ranish JA, Brand M. Gillespie MA, et al. Among authors: longabaugh wjr. Mol Cell. 2020 Jun 4;78(5):960-974.e11. doi: 10.1016/j.molcel.2020.03.031. Epub 2020 Apr 23. Mol Cell. 2020. PMID: 32330456 Free PMC article.

9

A high-resolution network model for global gene regulation in Mycobacterium tuberculosis.

Peterson EJ, Reiss DJ, Turkarslan S, Minch KJ, Rustad T, Plaisier CL, Longabaugh WJ, Sherman DR, Baliga NS. Peterson EJ, et al. Nucleic Acids Res. 2014 Oct;42(18):11291-303. doi: 10.1093/nar/gku777. Epub 2014 Sep 17. Nucleic Acids Res. 2014. PMID: 25232098 Free PMC article.

10

Genomic characterization of Gli-activator targets in sonic hedgehog-mediated neural patterning.

Vokes SA, Ji H, McCuine S, Tenzen T, Giles S, Zhong S, Longabaugh WJ, Davidson EH, Wong WH, McMahon AP. Vokes SA, et al. Development. 2007 May;134(10):1977-89. doi: 10.1242/dev.001966. Epub 2007 Apr 18. Development. 2007. PMID: 17442700 Free article.

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