Donald BR - Search Results

1

Algorithm for backrub motions in protein design.

Georgiev I, Keedy D, Richardson JS, Richardson DC, Donald BR. Georgiev I, et al. Among authors: donald br. Bioinformatics. 2008 Jul 1;24(13):i196-204. doi: 10.1093/bioinformatics/btn169. Bioinformatics. 2008. PMID: 18586714 Free PMC article.

2

A novel ensemble-based scoring and search algorithm for protein redesign and its application to modify the substrate specificity of the gramicidin synthetase a phenylalanine adenylation enzyme.

Lilien RH, Stevens BW, Anderson AC, Donald BR. Lilien RH, et al. Among authors: donald br. J Comput Biol. 2005 Jul-Aug;12(6):740-61. doi: 10.1089/cmb.2005.12.740. J Comput Biol. 2005. PMID: 16108714

3

An efficient and accurate algorithm for assigning nuclear overhauser effect restraints using a rotamer library ensemble and residual dipolar couplings.

Wang L, Donald BR. Wang L, et al. Among authors: donald br. Proc IEEE Comput Syst Bioinform Conf. 2005:189-202. doi: 10.1109/csb.2005.13. Proc IEEE Comput Syst Bioinform Conf. 2005. PMID: 16447976

4

An algebraic geometry approach to protein structure determination from NMR data.

Wang L, Mettu RR, Donald BR. Wang L, et al. Among authors: donald br. Proc IEEE Comput Syst Bioinform Conf. 2005:235-46. doi: 10.1109/csb.2005.11. Proc IEEE Comput Syst Bioinform Conf. 2005. PMID: 16447981

5

Analysis of a systematic search-based algorithm for determining protein backbone structure from a minimum number of residual dipolar couplings.

Wang L, Donald BR. Wang L, et al. Among authors: donald br. Proc IEEE Comput Syst Bioinform Conf. 2004:319-30. doi: 10.1109/csb.2004.1332445. Proc IEEE Comput Syst Bioinform Conf. 2004. PMID: 16448025

6

Improved Pruning algorithms and Divide-and-Conquer strategies for Dead-End Elimination, with application to protein design.

Georgiev I, Lilien RH, Donald BR. Georgiev I, et al. Among authors: donald br. Bioinformatics. 2006 Jul 15;22(14):e174-83. doi: 10.1093/bioinformatics/btl220. Bioinformatics. 2006. PMID: 16873469

7

Redesigning the PheA domain of gramicidin synthetase leads to a new understanding of the enzyme's mechanism and selectivity.

Stevens BW, Lilien RH, Georgiev I, Donald BR, Anderson AC. Stevens BW, et al. Among authors: donald br. Biochemistry. 2006 Dec 26;45(51):15495-504. doi: 10.1021/bi061788m. Epub 2006 Dec 19. Biochemistry. 2006. PMID: 17176071

8

Dead-end elimination with backbone flexibility.

Georgiev I, Donald BR. Georgiev I, et al. Among authors: donald br. Bioinformatics. 2007 Jul 1;23(13):i185-94. doi: 10.1093/bioinformatics/btm197. Bioinformatics. 2007. PMID: 17646295

9

The minimized dead-end elimination criterion and its application to protein redesign in a hybrid scoring and search algorithm for computing partition functions over molecular ensembles.

Georgiev I, Lilien RH, Donald BR. Georgiev I, et al. Among authors: donald br. J Comput Chem. 2008 Jul 30;29(10):1527-42. doi: 10.1002/jcc.20909. J Comput Chem. 2008. PMID: 18293294 Free PMC article.

10

Structure-based protein NMR assignments using native structural ensembles.

Apaydin MS, Conitzer V, Donald BR. Apaydin MS, et al. Among authors: donald br. J Biomol NMR. 2008 Apr;40(4):263-76. doi: 10.1007/s10858-008-9230-x. Epub 2008 Mar 26. J Biomol NMR. 2008. PMID: 18365752

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