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Using galaxy to perform large-scale interactive data analyses.
Taylor J, Schenck I, Blankenberg D, Nekrutenko A. Taylor J, et al. Among authors: nekrutenko a. Curr Protoc Bioinformatics. 2007 Sep;Chapter 10:Unit 10.5. doi: 10.1002/0471250953.bi1005s19. Curr Protoc Bioinformatics. 2007. PMID: 18428782 Free PMC article.
Galaxy: a platform for interactive large-scale genome analysis.
Giardine B, Riemer C, Hardison RC, Burhans R, Elnitski L, Shah P, Zhang Y, Blankenberg D, Albert I, Taylor J, Miller W, Kent WJ, Nekrutenko A. Giardine B, et al. Among authors: nekrutenko a. Genome Res. 2005 Oct;15(10):1451-5. doi: 10.1101/gr.4086505. Epub 2005 Sep 16. Genome Res. 2005. PMID: 16169926 Free PMC article.
28-way vertebrate alignment and conservation track in the UCSC Genome Browser.
Miller W, Rosenbloom K, Hardison RC, Hou M, Taylor J, Raney B, Burhans R, King DC, Baertsch R, Blankenberg D, Kosakovsky Pond SL, Nekrutenko A, Giardine B, Harris RS, Tyekucheva S, Diekhans M, Pringle TH, Murphy WJ, Lesk A, Weinstock GM, Lindblad-Toh K, Gibbs RA, Lander ES, Siepel A, Haussler D, Kent WJ. Miller W, et al. Among authors: nekrutenko a. Genome Res. 2007 Dec;17(12):1797-808. doi: 10.1101/gr.6761107. Epub 2007 Nov 5. Genome Res. 2007. PMID: 17984227 Free PMC article.
Windshield splatter analysis with the Galaxy metagenomic pipeline.
Kosakovsky Pond S, Wadhawan S, Chiaromonte F, Ananda G, Chung WY, Taylor J, Nekrutenko A; Galaxy Team. Kosakovsky Pond S, et al. Among authors: nekrutenko a. Genome Res. 2009 Nov;19(11):2144-53. doi: 10.1101/gr.094508.109. Epub 2009 Oct 9. Genome Res. 2009. PMID: 19819906 Free PMC article.
Galaxy: a web-based genome analysis tool for experimentalists.
Blankenberg D, Von Kuster G, Coraor N, Ananda G, Lazarus R, Mangan M, Nekrutenko A, Taylor J. Blankenberg D, et al. Among authors: nekrutenko a. Curr Protoc Mol Biol. 2010 Jan;Chapter 19:Unit 19.10.1-21. doi: 10.1002/0471142727.mb1910s89. Curr Protoc Mol Biol. 2010. PMID: 20069535 Free PMC article.
Web-based analysis of (Epi-) genome data using EpiGRAPH and Galaxy.
Bock C, Von Kuster G, Halachev K, Taylor J, Nekrutenko A, Lengauer T. Bock C, et al. Among authors: nekrutenko a. Methods Mol Biol. 2010;628:275-96. doi: 10.1007/978-1-60327-367-1_15. Methods Mol Biol. 2010. PMID: 20238087 Free PMC article.
Manipulation of FASTQ data with Galaxy.
Blankenberg D, Gordon A, Von Kuster G, Coraor N, Taylor J, Nekrutenko A; Galaxy Team. Blankenberg D, et al. Among authors: nekrutenko a. Bioinformatics. 2010 Jul 15;26(14):1783-5. doi: 10.1093/bioinformatics/btq281. Epub 2010 Jun 18. Bioinformatics. 2010. PMID: 20562416 Free PMC article.
Galaxy CloudMan: delivering cloud compute clusters.
Afgan E, Baker D, Coraor N, Chapman B, Nekrutenko A, Taylor J. Afgan E, et al. Among authors: nekrutenko a. BMC Bioinformatics. 2010 Dec 21;11 Suppl 12(Suppl 12):S4. doi: 10.1186/1471-2105-11-S12-S4. BMC Bioinformatics. 2010. PMID: 21210983 Free PMC article.
103 results