Dolenc J - Search Results

1

Molecular simulation as an aid to experimentalists.

van Gunsteren WF, Dolenc J, Mark AE. van Gunsteren WF, et al. Among authors: dolenc j. Curr Opin Struct Biol. 2008 Apr;18(2):149-53. doi: 10.1016/j.sbi.2007.12.007. Epub 2008 Feb 14. Curr Opin Struct Biol. 2008. PMID: 18280138 Review.

2

Biomolecular simulation: historical picture and future perspectives.

van Gunsteren WF, Dolenc J. van Gunsteren WF, et al. Among authors: dolenc j. Biochem Soc Trans. 2008 Feb;36(Pt 1):11-5. doi: 10.1042/BST0360011. Biochem Soc Trans. 2008. PMID: 18208376

3

Methods of NMR structure refinement: molecular dynamics simulations improve the agreement with measured NMR data of a C-terminal peptide of GCN4-p1.

Dolenc J, Missimer JH, Steinmetz MO, van Gunsteren WF. Dolenc J, et al. J Biomol NMR. 2010 Jul;47(3):221-35. doi: 10.1007/s10858-010-9425-9. Epub 2010 Jun 4. J Biomol NMR. 2010. PMID: 20524044

4

Biomolecular structure refinement using the GROMOS simulation software.

Schmid N, Allison JR, Dolenc J, Eichenberger AP, Kunz AP, van Gunsteren WF. Schmid N, et al. Among authors: dolenc j. J Biomol NMR. 2011 Nov;51(3):265-81. doi: 10.1007/s10858-011-9534-0. Epub 2011 Aug 20. J Biomol NMR. 2011. PMID: 21858640

5

Multi-resolution simulation of biomolecular systems: a review of methodological issues.

Meier K, Choutko A, Dolenc J, Eichenberger AP, Riniker S, van Gunsteren WF. Meier K, et al. Among authors: dolenc j. Angew Chem Int Ed Engl. 2013 Mar 4;52(10):2820-34. doi: 10.1002/anie.201205408. Epub 2013 Feb 18. Angew Chem Int Ed Engl. 2013. PMID: 23417997 Review.

6

Deriving Structural Information from Experimentally Measured Data on Biomolecules.

van Gunsteren WF, Allison JR, Daura X, Dolenc J, Hansen N, Mark AE, Oostenbrink C, Rusu VH, Smith LJ. van Gunsteren WF, et al. Among authors: dolenc j. Angew Chem Int Ed Engl. 2016 Dec 23;55(52):15990-16010. doi: 10.1002/anie.201601828. Epub 2016 Nov 8. Angew Chem Int Ed Engl. 2016. PMID: 27862777 Review.

7

Configurational entropy change of netropsin and distamycin upon DNA minor-groove binding.

Dolenc J, Baron R, Oostenbrink C, Koller J, van Gunsteren WF. Dolenc J, et al. Biophys J. 2006 Aug 15;91(4):1460-70. doi: 10.1529/biophysj.105.074617. Epub 2006 May 26. Biophys J. 2006. PMID: 16731550 Free PMC article.

8

Exploring the conserved water site and hydration of a coiled-coil trimerisation motif: a MD simulation study.

Dolenc J, Baron R, Missimer JH, Steinmetz MO, van Gunsteren WF. Dolenc J, et al. Chembiochem. 2008 Jul 21;9(11):1749-56. doi: 10.1002/cbic.200800096. Chembiochem. 2008. PMID: 18553323

9

Molecular dynamics simulations shed light on the enthalpic and entropic driving forces that govern the sequence specific recognition between netropsin and DNA.

Dolenc J, Gerster S, van Gunsteren WF. Dolenc J, et al. J Phys Chem B. 2010 Sep 2;114(34):11164-72. doi: 10.1021/jp100483f. J Phys Chem B. 2010. PMID: 20690690

10

Exploring the trigger sequence of the GCN4 coiled-coil: biased molecular dynamics resolves apparent inconsistencies in NMR measurements.

Missimer JH, Dolenc J, Steinmetz MO, van Gunsteren WF. Missimer JH, et al. Among authors: dolenc j. Protein Sci. 2010 Dec;19(12):2462-74. doi: 10.1002/pro.528. Protein Sci. 2010. PMID: 20954244 Free PMC article.

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