Gifford D - Search Results

1

GSE: a comprehensive database system for the representation, retrieval, and analysis of microarray data.

Danford T, Rolfe A, Gifford D. Danford T, et al. Among authors: gifford d. Pac Symp Biocomput. 2008:539-50. Pac Symp Biocomput. 2008. PMID: 18229714 Free PMC article.

2

Using graphical models and genomic expression data to statistically validate models of genetic regulatory networks.

Hartemink AJ, Gifford DK, Jaakkola TS, Young RA. Hartemink AJ, et al. Among authors: gifford dk. Pac Symp Biocomput. 2001:422-33. doi: 10.1142/9789814447362_0042. Pac Symp Biocomput. 2001. PMID: 11262961 Free article.

3

Negative information for motif discovery.

Takusagawa KT, Gifford DK. Takusagawa KT, et al. Among authors: gifford dk. Pac Symp Biocomput. 2004:360-71. doi: 10.1142/9789812704856_0034. Pac Symp Biocomput. 2004. PMID: 14992517 Free article.

4

Transcriptional regulatory code of a eukaryotic genome.

Harbison CT, Gordon DB, Lee TI, Rinaldi NJ, Macisaac KD, Danford TW, Hannett NM, Tagne JB, Reynolds DB, Yoo J, Jennings EG, Zeitlinger J, Pokholok DK, Kellis M, Rolfe PA, Takusagawa KT, Lander ES, Gifford DK, Fraenkel E, Young RA. Harbison CT, et al. Among authors: gifford dk. Nature. 2004 Sep 2;431(7004):99-104. doi: 10.1038/nature02800. Nature. 2004. PMID: 15343339 Free PMC article.

5

Global position and recruitment of HATs and HDACs in the yeast genome.

Robert F, Pokholok DK, Hannett NM, Rinaldi NJ, Chandy M, Rolfe A, Workman JL, Gifford DK, Young RA. Robert F, et al. Mol Cell. 2004 Oct 22;16(2):199-209. doi: 10.1016/j.molcel.2004.09.021. Mol Cell. 2004. PMID: 15494307 Free PMC article.

6

A hypothesis-based approach for identifying the binding specificity of regulatory proteins from chromatin immunoprecipitation data.

Macisaac KD, Gordon DB, Nekludova L, Odom DT, Schreiber J, Gifford DK, Young RA, Fraenkel E. Macisaac KD, et al. Among authors: gifford dk. Bioinformatics. 2006 Feb 15;22(4):423-9. doi: 10.1093/bioinformatics/bti815. Epub 2005 Dec 6. Bioinformatics. 2006. PMID: 16332710

7

Core transcriptional regulatory circuitry in human hepatocytes.

Odom DT, Dowell RD, Jacobsen ES, Nekludova L, Rolfe PA, Danford TW, Gifford DK, Fraenkel E, Bell GI, Young RA. Odom DT, et al. Among authors: gifford dk. Mol Syst Biol. 2006;2:2006.0017. doi: 10.1038/msb4100059. Epub 2006 May 2. Mol Syst Biol. 2006. PMID: 16738562 Free PMC article.

8

High-resolution computational models of genome binding events.

Qi Y, Rolfe A, MacIsaac KD, Gerber GK, Pokholok D, Zeitlinger J, Danford T, Dowell RD, Fraenkel E, Jaakkola TS, Young RA, Gifford DK. Qi Y, et al. Among authors: gifford dk. Nat Biotechnol. 2006 Aug;24(8):963-70. doi: 10.1038/nbt1233. Nat Biotechnol. 2006. PMID: 16900145

9

Tissue-specific transcriptional regulation has diverged significantly between human and mouse.

Odom DT, Dowell RD, Jacobsen ES, Gordon W, Danford TW, MacIsaac KD, Rolfe PA, Conboy CM, Gifford DK, Fraenkel E. Odom DT, et al. Among authors: gifford dk. Nat Genet. 2007 Jun;39(6):730-2. doi: 10.1038/ng2047. Epub 2007 May 21. Nat Genet. 2007. PMID: 17529977 Free PMC article.

10

Analysis of the mouse embryonic stem cell regulatory networks obtained by ChIP-chip and ChIP-PET.

Mathur D, Danford TW, Boyer LA, Young RA, Gifford DK, Jaenisch R. Mathur D, et al. Among authors: gifford dk. Genome Biol. 2008;9(8):R126. doi: 10.1186/gb-2008-9-8-r126. Epub 2008 Aug 13. Genome Biol. 2008. PMID: 18700969 Free PMC article.

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