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A predictive model for transcriptional control of physiology in a free living cell.
Bonneau R, Facciotti MT, Reiss DJ, Schmid AK, Pan M, Kaur A, Thorsson V, Shannon P, Johnson MH, Bare JC, Longabaugh W, Vuthoori M, Whitehead K, Madar A, Suzuki L, Mori T, Chang DE, Diruggiero J, Johnson CH, Hood L, Baliga NS. Bonneau R, et al. Among authors: bare jc. Cell. 2007 Dec 28;131(7):1354-65. doi: 10.1016/j.cell.2007.10.053. Cell. 2007. PMID: 18160043 Free article.
Prevalence of transcription promoters within archaeal operons and coding sequences.
Koide T, Reiss DJ, Bare JC, Pang WL, Facciotti MT, Schmid AK, Pan M, Marzolf B, Van PT, Lo FY, Pratap A, Deutsch EW, Peterson A, Martin D, Baliga NS. Koide T, et al. Among authors: bare jc. Mol Syst Biol. 2009;5:285. doi: 10.1038/msb.2009.42. Epub 2009 Jun 16. Mol Syst Biol. 2009. PMID: 19536208 Free PMC article.
Parallel evolution of transcriptome architecture during genome reorganization.
Yoon SH, Reiss DJ, Bare JC, Tenenbaum D, Pan M, Slagel J, Moritz RL, Lim S, Hackett M, Menon AL, Adams MW, Barnebey A, Yannone SM, Leigh JA, Baliga NS. Yoon SH, et al. Among authors: bare jc. Genome Res. 2011 Nov;21(11):1892-904. doi: 10.1101/gr.122218.111. Epub 2011 Jul 12. Genome Res. 2011. PMID: 21750103 Free PMC article.
Architecture for interoperable software in biology.
Bare JC, Baliga NS. Bare JC, et al. Brief Bioinform. 2014 Jul;15(4):626-36. doi: 10.1093/bib/bbs074. Epub 2012 Dec 11. Brief Bioinform. 2014. PMID: 23235920 Free PMC article.
31 results