Neuwald AF - Search Results

1

Evolution of allostery in the cyclic nucleotide binding module.

Kannan N, Wu J, Anand GS, Yooseph S, Neuwald AF, Venter JC, Taylor SS. Kannan N, et al. Among authors: neuwald af. Genome Biol. 2007;8(12):R264. doi: 10.1186/gb-2007-8-12-r264. Genome Biol. 2007. PMID: 18076763 Free PMC article.

2

The hallmark of AGC kinase functional divergence is its C-terminal tail, a cis-acting regulatory module.

Kannan N, Haste N, Taylor SS, Neuwald AF. Kannan N, et al. Among authors: neuwald af. Proc Natl Acad Sci U S A. 2007 Jan 23;104(4):1272-7. doi: 10.1073/pnas.0610251104. Epub 2007 Jan 16. Proc Natl Acad Sci U S A. 2007. PMID: 17227859 Free PMC article.

3

Analogous regulatory sites within the alphaC-beta4 loop regions of ZAP-70 tyrosine kinase and AGC kinases.

Kannan N, Neuwald AF, Taylor SS. Kannan N, et al. Among authors: neuwald af. Biochim Biophys Acta. 2008 Jan;1784(1):27-32. doi: 10.1016/j.bbapap.2007.09.007. Epub 2007 Sep 29. Biochim Biophys Acta. 2008. PMID: 17977811 Free PMC article. Review.

4

Evolutionary constraints associated with functional specificity of the CMGC protein kinases MAPK, CDK, GSK, SRPK, DYRK, and CK2alpha.

Kannan N, Neuwald AF. Kannan N, et al. Among authors: neuwald af. Protein Sci. 2004 Aug;13(8):2059-77. doi: 10.1110/ps.04637904. Protein Sci. 2004. PMID: 15273306 Free PMC article.

5

Did protein kinase regulatory mechanisms evolve through elaboration of a simple structural component?

Kannan N, Neuwald AF. Kannan N, et al. Among authors: neuwald af. J Mol Biol. 2005 Sep 2;351(5):956-72. doi: 10.1016/j.jmb.2005.06.057. J Mol Biol. 2005. PMID: 16051269

6

Ran's C-terminal, basic patch, and nucleotide exchange mechanisms in light of a canonical structure for Rab, Rho, Ras, and Ran GTPases.

Neuwald AF, Kannan N, Poleksic A, Hata N, Liu JS. Neuwald AF, et al. Genome Res. 2003 Apr;13(4):673-92. doi: 10.1101/gr.862303. Genome Res. 2003. PMID: 12671004 Free PMC article.

7

Identification and classification of small molecule kinases: insights into substrate recognition and specificity.

Oruganty K, Talevich EE, Neuwald AF, Kannan N. Oruganty K, et al. Among authors: neuwald af. BMC Evol Biol. 2016 Jan 6;16:7. doi: 10.1186/s12862-015-0576-x. BMC Evol Biol. 2016. PMID: 26738562 Free PMC article.

8

Computational analysis of protein tyrosine phosphatases: practical guide to bioinformatics and data resources.

Andersen JN, Del Vecchio RL, Kannan N, Gergel J, Neuwald AF, Tonks NK. Andersen JN, et al. Among authors: neuwald af. Methods. 2005 Jan;35(1):90-114. doi: 10.1016/j.ymeth.2004.07.012. Methods. 2005. PMID: 15588990 Review.

9

The glycine brace: a component of Rab, Rho, and Ran GTPases associated with hinge regions of guanine- and phosphate-binding loops.

Neuwald AF. Neuwald AF. BMC Struct Biol. 2009 Mar 5;9:11. doi: 10.1186/1472-6807-9-11. BMC Struct Biol. 2009. PMID: 19265520 Free PMC article.

10

Evaluating, comparing, and interpreting protein domain hierarchies.

Neuwald AF. Neuwald AF. J Comput Biol. 2014 Apr;21(4):287-302. doi: 10.1089/cmb.2013.0098. Epub 2014 Feb 21. J Comput Biol. 2014. PMID: 24559108 Free PMC article.

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