Feder M - Search Results

1

Virtual screening and experimental verification to identify potential inhibitors of the ErmC methyltransferase responsible for bacterial resistance against macrolide antibiotics.

Feder M, Purta E, Koscinski L, Cubrilo S, Maravic Vlahovicek G, Bujnicki JM. Feder M, et al. ChemMedChem. 2008 Feb;3(2):316-22. doi: 10.1002/cmdc.200700201. ChemMedChem. 2008. PMID: 18038381

2

Novel inhibitors of the rRNA ErmC' methyltransferase to block resistance to macrolides, lincosamides, streptogramine B antibiotics.

Foik IP, Tuszynska I, Feder M, Purta E, Stefaniak F, Bujnicki JM. Foik IP, et al. Among authors: feder m. Eur J Med Chem. 2018 Feb 25;146:60-67. doi: 10.1016/j.ejmech.2017.11.032. Epub 2018 Jan 6. Eur J Med Chem. 2018. PMID: 29396363

3

Molecular phylogenetics of the RrmJ/fibrillarin superfamily of ribose 2'-O-methyltransferases.

Feder M, Pas J, Wyrwicz LS, Bujnicki JM. Feder M, et al. Gene. 2003 Jan 2;302(1-2):129-38. doi: 10.1016/s0378-1119(02)01097-1. Gene. 2003. PMID: 12527203

4

Characterization of the cofactor-binding site in the SPOUT-fold methyltransferases by computational docking of S-adenosylmethionine to three crystal structures.

Kurowski MA, Sasin JM, Feder M, Debski J, Bujnicki JM. Kurowski MA, et al. Among authors: feder m. BMC Bioinformatics. 2003 Mar 14;4:9. doi: 10.1186/1471-2105-4-9. Epub 2003 Mar 14. BMC Bioinformatics. 2003. PMID: 12689347 Free PMC article.

5

Alanine-scanning mutagenesis of the predicted rRNA-binding domain of ErmC' redefines the substrate-binding site and suggests a model for protein-RNA interactions.

Maravić G, Bujnicki JM, Feder M, Pongor S, Flögel M. Maravić G, et al. Among authors: feder m. Nucleic Acids Res. 2003 Aug 15;31(16):4941-9. doi: 10.1093/nar/gkg666. Nucleic Acids Res. 2003. PMID: 12907737 Free PMC article.

6

Mutational analysis defines the roles of conserved amino acid residues in the predicted catalytic pocket of the rRNA:m6A methyltransferase ErmC'.

Maravić G, Feder M, Pongor S, Flögel M, Bujnicki JM. Maravić G, et al. Among authors: feder m. J Mol Biol. 2003 Sep 5;332(1):99-109. doi: 10.1016/s0022-2836(03)00863-5. J Mol Biol. 2003. PMID: 12946350

7

Sequence-structure-function studies of tRNA:m5C methyltransferase Trm4p and its relationship to DNA:m5C and RNA:m5U methyltransferases.

Bujnicki JM, Feder M, Ayres CL, Redman KL. Bujnicki JM, et al. Among authors: feder m. Nucleic Acids Res. 2004 Apr 30;32(8):2453-63. doi: 10.1093/nar/gkh564. Print 2004. Nucleic Acids Res. 2004. PMID: 15121902 Free PMC article.

8

Identification of a new family of putative PD-(D/E)XK nucleases with unusual phylogenomic distribution and a new type of the active site.

Feder M, Bujnicki JM. Feder M, et al. BMC Genomics. 2005 Feb 18;6:21. doi: 10.1186/1471-2164-6-21. BMC Genomics. 2005. PMID: 15720711 Free PMC article.

9

Sequence-structure-function relationships of a tRNA (m7G46) methyltransferase studied by homology modeling and site-directed mutagenesis.

Purta E, van Vliet F, Tricot C, De Bie LG, Feder M, Skowronek K, Droogmans L, Bujnicki JM. Purta E, et al. Among authors: feder m. Proteins. 2005 May 15;59(3):482-8. doi: 10.1002/prot.20454. Proteins. 2005. PMID: 15789416

10

The PD-(D/E)XK superfamily revisited: identification of new members among proteins involved in DNA metabolism and functional predictions for domains of (hitherto) unknown function.

Kosinski J, Feder M, Bujnicki JM. Kosinski J, et al. Among authors: feder m. BMC Bioinformatics. 2005 Jul 12;6:172. doi: 10.1186/1471-2105-6-172. BMC Bioinformatics. 2005. PMID: 16011798 Free PMC article.

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