Reid A - Search Results

1

Gene3D: comprehensive structural and functional annotation of genomes.

Yeats C, Lees J, Reid A, Kellam P, Martin N, Liu X, Orengo C. Yeats C, et al. Among authors: reid a. Nucleic Acids Res. 2008 Jan;36(Database issue):D414-8. doi: 10.1093/nar/gkm1019. Epub 2007 Nov 21. Nucleic Acids Res. 2008. PMID: 18032434 Free PMC article.

2

The evolution of protein functions and networks: a family-centric approach.

Dessailly BH, Reid AJ, Yeats C, Lees JG, Cuff A, Orengo CA. Dessailly BH, et al. Among authors: reid aj. Biochem Soc Trans. 2009 Aug;37(Pt 4):745-50. doi: 10.1042/BST0370745. Biochem Soc Trans. 2009. PMID: 19614587

3

Methods of remote homology detection can be combined to increase coverage by 10% in the midnight zone.

Reid AJ, Yeats C, Orengo CA. Reid AJ, et al. Bioinformatics. 2007 Sep 15;23(18):2353-60. doi: 10.1093/bioinformatics/btm355. Epub 2007 Aug 20. Bioinformatics. 2007. PMID: 17709341

4

The CATH domain structure database: new protocols and classification levels give a more comprehensive resource for exploring evolution.

Greene LH, Lewis TE, Addou S, Cuff A, Dallman T, Dibley M, Redfern O, Pearl F, Nambudiry R, Reid A, Sillitoe I, Yeats C, Thornton JM, Orengo CA. Greene LH, et al. Among authors: reid a. Nucleic Acids Res. 2007 Jan;35(Database issue):D291-7. doi: 10.1093/nar/gkl959. Epub 2006 Nov 29. Nucleic Acids Res. 2007. PMID: 17135200 Free PMC article.

5

CODA: accurate detection of functional associations between proteins in eukaryotic genomes using domain fusion.

Reid AJ, Ranea JA, Clegg AB, Orengo CA. Reid AJ, et al. PLoS One. 2010 Jun 1;5(6):e10908. doi: 10.1371/journal.pone.0010908. PLoS One. 2010. PMID: 20532224 Free PMC article.

6

Comparative evolutionary analysis of protein complexes in E. coli and yeast.

Reid AJ, Ranea JA, Orengo CA. Reid AJ, et al. BMC Genomics. 2010 Feb 1;11:79. doi: 10.1186/1471-2164-11-79. BMC Genomics. 2010. PMID: 20122144 Free PMC article.

7

Finding the "dark matter" in human and yeast protein network prediction and modelling.

Ranea JA, Morilla I, Lees JG, Reid AJ, Yeats C, Clegg AB, Sanchez-Jimenez F, Orengo C. Ranea JA, et al. Among authors: reid aj. PLoS Comput Biol. 2010 Sep 23;6(9):e1000945. doi: 10.1371/journal.pcbi.1000945. PLoS Comput Biol. 2010. PMID: 20885791 Free PMC article.

8

The CATH hierarchy revisited-structural divergence in domain superfamilies and the continuity of fold space.

Cuff A, Redfern OC, Greene L, Sillitoe I, Lewis T, Dibley M, Reid A, Pearl F, Dallman T, Todd A, Garratt R, Thornton J, Orengo C. Cuff A, et al. Among authors: reid a. Structure. 2009 Aug 12;17(8):1051-62. doi: 10.1016/j.str.2009.06.015. Structure. 2009. PMID: 19679085 Free PMC article.

9

Assessment of protein domain fusions in human protein interaction networks prediction: application to the human kinetochore model.

Morilla I, Lees JG, Reid AJ, Orengo C, Ranea JA. Morilla I, et al. Among authors: reid aj. N Biotechnol. 2010 Dec 31;27(6):755-65. doi: 10.1016/j.nbt.2010.09.005. Epub 2010 Sep 17. N Biotechnol. 2010. PMID: 20851221

10

Uncovering the molecular machinery of the human spindle--an integration of wet and dry systems biology.

Rojas AM, Santamaria A, Malik R, Jensen TS, Körner R, Morilla I, de Juan D, Krallinger M, Hansen DA, Hoffmann R, Lees J, Reid A, Yeats C, Wehner A, Elowe S, Clegg AB, Brunak S, Nigg EA, Orengo C, Valencia A, Ranea JA. Rojas AM, et al. Among authors: reid a. PLoS One. 2012;7(3):e31813. doi: 10.1371/journal.pone.0031813. Epub 2012 Mar 9. PLoS One. 2012. PMID: 22427808 Free PMC article.

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