Friesner RA - Search Results

1

Structural analysis of protein dynamics by MD simulations and NMR spin-relaxation.

Trbovic N, Kim B, Friesner RA, Palmer AG 3rd. Trbovic N, et al. Among authors: friesner ra. Proteins. 2008 May 1;71(2):684-94. doi: 10.1002/prot.21750. Proteins. 2008. PMID: 17975832 Free PMC article.

2

Tertiary structure prediction of mixed alpha/beta proteins via energy minimization.

Standley DM, Gunn JR, Friesner RA, McDermott AE. Standley DM, et al. Among authors: friesner ra. Proteins. 1998 Nov 1;33(2):240-52. Proteins. 1998. PMID: 9779791

3

Protein tertiary structure prediction using a branch and bound algorithm.

Eyrich VA, Standley DM, Felts AK, Friesner RA. Eyrich VA, et al. Among authors: friesner ra. Proteins. 1999 Apr 1;35(1):41-57. Proteins. 1999. PMID: 10090285

4

Prediction of loop geometries using a generalized born model of solvation effects.

Rapp CS, Friesner RA. Rapp CS, et al. Among authors: friesner ra. Proteins. 1999 May 1;35(2):173-83. Proteins. 1999. PMID: 10223290

5

Protein structure prediction using a combination of sequence-based alignment, constrained energy minimization, and structural alignment.

Standley DM, Eyrich VA, An Y, Pincus DL, Gunn JR, Friesner RA. Standley DM, et al. Among authors: friesner ra. Proteins. 2001;Suppl 5:133-9. doi: 10.1002/prot.10005. Proteins. 2001. PMID: 11835490

6

A novel fold recognition method using composite predicted secondary structures.

An Y, Friesner RA. An Y, et al. Among authors: friesner ra. Proteins. 2002 Aug 1;48(2):352-66. doi: 10.1002/prot.10145. Proteins. 2002. PMID: 12112702

7

High-resolution prediction of protein helix positions and orientations.

Li X, Jacobson MP, Friesner RA. Li X, et al. Among authors: friesner ra. Proteins. 2004 May 1;55(2):368-82. doi: 10.1002/prot.20014. Proteins. 2004. PMID: 15048828

8

Replica exchange with solute tempering: a method for sampling biological systems in explicit water.

Liu P, Kim B, Friesner RA, Berne BJ. Liu P, et al. Among authors: friesner ra. Proc Natl Acad Sci U S A. 2005 Sep 27;102(39):13749-54. doi: 10.1073/pnas.0506346102. Epub 2005 Sep 19. Proc Natl Acad Sci U S A. 2005. PMID: 16172406 Free PMC article.

9

Modeling Polarization in Proteins and Protein-ligand Complexes: Methods and Preliminary Results.

Friesner RA. Friesner RA. Adv Protein Chem. 2005;72:79-104. doi: 10.1016/S0065-3233(05)72003-9. Adv Protein Chem. 2005. PMID: 16581373

10

Structure and dynamics of the solvation of bovine pancreatic trypsin inhibitor in explicit water: a comparative study of the effects of solvent and protein polarizability.

Kim B, Young T, Harder E, Friesner RA, Berne BJ. Kim B, et al. Among authors: friesner ra. J Phys Chem B. 2005 Sep 1;109(34):16529-38. doi: 10.1021/jp051569v. J Phys Chem B. 2005. PMID: 16853101 Free PMC article.

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