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Multiple independent introductions of Plasmodium falciparum in South America.
Yalcindag E, Elguero E, Arnathau C, Durand P, Akiana J, Anderson TJ, Aubouy A, Balloux F, Besnard P, Bogreau H, Carnevale P, D'Alessandro U, Fontenille D, Gamboa D, Jombart T, Le Mire J, Leroy E, Maestre A, Mayxay M, Ménard D, Musset L, Newton PN, Nkoghé D, Noya O, Ollomo B, Rogier C, Veron V, Wide A, Zakeri S, Carme B, Legrand E, Chevillon C, Ayala FJ, Renaud F, Prugnolle F. Yalcindag E, et al. Among authors: jombart t. Proc Natl Acad Sci U S A. 2012 Jan 10;109(2):511-6. doi: 10.1073/pnas.1119058109. Epub 2011 Dec 27. Proc Natl Acad Sci U S A. 2012. PMID: 22203975 Free PMC article.
A fast likelihood solution to the genetic clustering problem.
Beugin MP, Gayet T, Pontier D, Devillard S, Jombart T. Beugin MP, et al. Among authors: jombart t. Methods Ecol Evol. 2018 Apr;9(4):1006-1016. doi: 10.1111/2041-210X.12968. Epub 2018 Jan 30. Methods Ecol Evol. 2018. PMID: 29938015 Free PMC article.
Phylogeography of Toxoplasma gondii points to a South American origin.
Bertranpetit E, Jombart T, Paradis E, Pena H, Dubey J, Su C, Mercier A, Devillard S, Ajzenberg D. Bertranpetit E, et al. Among authors: jombart t. Infect Genet Evol. 2017 Mar;48:150-155. doi: 10.1016/j.meegid.2016.12.020. Epub 2016 Dec 24. Infect Genet Evol. 2017. PMID: 28028000 Free article.
adegenet 1.3-1: new tools for the analysis of genome-wide SNP data.
Jombart T, Ahmed I. Jombart T, et al. Bioinformatics. 2011 Nov 1;27(21):3070-1. doi: 10.1093/bioinformatics/btr521. Epub 2011 Sep 16. Bioinformatics. 2011. PMID: 21926124 Free PMC article.
Information and support including a dedicated forum of discussion can be found on the adegenet website: http://adegenet.r-forge.r-project.org/. adegenet is released with a manual and four tutorials totalling over 300 pages of documentation, and distributed under the GNU General P …
Information and support including a dedicated forum of discussion can be found on the adegenet website: http://adegenet.r-forge.r-project.or …
131 results