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Semiautomated improvement of RNA alignments.
Andersen ES, Lind-Thomsen A, Knudsen B, Kristensen SE, Havgaard JH, Torarinsson E, Larsen N, Zwieb C, Sestoft P, Kjems J, Gorodkin J. Andersen ES, et al. Among authors: knudsen b. RNA. 2007 Nov;13(11):1850-9. doi: 10.1261/rna.215407. Epub 2007 Sep 5. RNA. 2007. PMID: 17804647 Free PMC article.
RNA interactions in the 5' region of the HIV-1 genome.
Damgaard CK, Andersen ES, Knudsen B, Gorodkin J, Kjems J. Damgaard CK, et al. Among authors: knudsen b. J Mol Biol. 2004 Feb 13;336(2):369-79. doi: 10.1016/j.jmb.2003.12.010. J Mol Biol. 2004. PMID: 14757051
tmRDB (tmRNA database).
Zwieb C, Gorodkin J, Knudsen B, Burks J, Wower J. Zwieb C, et al. Among authors: knudsen b. Nucleic Acids Res. 2003 Jan 1;31(1):446-7. doi: 10.1093/nar/gkg019. Nucleic Acids Res. 2003. PMID: 12520048 Free PMC article.
Characterising RNA secondary structure space using information entropy.
Sükösd Z, Knudsen B, Anderson JW, Novák A, Kjems J, Pedersen CN. Sükösd Z, et al. Among authors: knudsen b. BMC Bioinformatics. 2013;14 Suppl 2(Suppl 2):S22. doi: 10.1186/1471-2105-14-S2-S22. Epub 2013 Jan 21. BMC Bioinformatics. 2013. PMID: 23368905 Free PMC article.
tmRDB (tmRNA database).
Knudsen B, Wower J, Zwieb C, Gorodkin J. Knudsen B, et al. Nucleic Acids Res. 2001 Jan 1;29(1):171-2. doi: 10.1093/nar/29.1.171. Nucleic Acids Res. 2001. PMID: 11125081 Free PMC article.
504 results