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Variability and bias in microbiome metagenomic sequencing: an interlaboratory study comparing experimental protocols.
Forry SP, Servetas SL, Kralj JG, Soh K, Hadjithomas M, Cano R, Carlin M, Amorim MG, Auch B, Bakker MG, Bartelli TF, Bustamante JP, Cassol I, Chalita M, Dias-Neto E, Duca AD, Gohl DM, Kazantseva J, Haruna MT, Menzel P, Moda BS, Neuberger-Castillo L, Nunes DN, Patel IR, Peralta RD, Saliou A, Schwarzer R, Sevilla S, Takenaka IKTM, Wang JR, Knight R, Gevers D, Jackson SA. Forry SP, et al. Among authors: patel ir. Sci Rep. 2024 Apr 29;14(1):9785. doi: 10.1038/s41598-024-57981-4. Sci Rep. 2024. PMID: 38684791 Free PMC article.
Characterization of Cronobacter sakazakii Strains Originating from Plant-Origin Foods Using Comparative Genomic Analyses and Zebrafish Infectivity Studies.
Jang H, Eshwar A, Lehner A, Gangiredla J, Patel IR, Beaubrun JJ, Chase HR, Negrete F, Finkelstein S, Weinstein LM, Ko K, Addy N, Ewing L, Woo J, Lee Y, Seo K, Jaradat Z, Srikumar S, Fanning S, Stephan R, Tall BD, Gopinath GR. Jang H, et al. Among authors: patel ir. Microorganisms. 2022 Jul 11;10(7):1396. doi: 10.3390/microorganisms10071396. Microorganisms. 2022. PMID: 35889115 Free PMC article.
Phylogenomic Analysis of Salmonella enterica subsp. enterica Serovar Bovismorbificans from Clinical and Food Samples Using Whole Genome Wide Core Genes and kmer Binning Methods to Identify Two Distinct Polyphyletic Genome Pathotypes.
Gopinath GR, Jang H, Beaubrun JJ, Gangiredla J, Mammel MK, Müller A, Tamber S, Patel IR, Ewing L, Weinstein LM, Wang CZ, Finkelstein S, Negrete F, Muruvanda T, Allard M, Sockett DC, Pagotto F, Tall BD, Stephan R. Gopinath GR, et al. Among authors: patel ir. Microorganisms. 2022 Jun 11;10(6):1199. doi: 10.3390/microorganisms10061199. Microorganisms. 2022. PMID: 35744717 Free PMC article.
Analysis of the Molecular Diversity Among Cronobacter Species Isolated From Filth Flies Using Targeted PCR, Pan Genomic DNA Microarray, and Whole Genome Sequencing Analyses.
Jang H, Chase HR, Gangiredla J, Grim CJ, Patel IR, Kothary MH, Jackson SA, Mammel MK, Carter L, Negrete F, Finkelstein S, Weinstein L, Yan Q, Iversen C, Pagotto F, Stephan R, Lehner A, Eshwar AK, Fanning S, Farber J, Gopinath GR, Tall BD, Pava-Ripoll M. Jang H, et al. Among authors: patel ir. Front Microbiol. 2020 Sep 25;11:561204. doi: 10.3389/fmicb.2020.561204. eCollection 2020. Front Microbiol. 2020. PMID: 33101235 Free PMC article.
63 results