Zhang JF - Search Results

1

pFind 2.0: a software package for peptide and protein identification via tandem mass spectrometry.

Wang LH, Li DQ, Fu Y, Wang HP, Zhang JF, Yuan ZF, Sun RX, Zeng R, He SM, Gao W. Wang LH, et al. Among authors: zhang jf. Rapid Commun Mass Spectrom. 2007;21(18):2985-91. doi: 10.1002/rcm.3173. Rapid Commun Mass Spectrom. 2007. PMID: 17702057

2

pParse: a method for accurate determination of monoisotopic peaks in high-resolution mass spectra.

Yuan ZF, Liu C, Wang HP, Sun RX, Fu Y, Zhang JF, Wang LH, Chi H, Li Y, Xiu LY, Wang WP, He SM. Yuan ZF, et al. Among authors: zhang jf. Proteomics. 2012 Jan;12(2):226-35. doi: 10.1002/pmic.201100081. Epub 2011 Dec 20. Proteomics. 2012. PMID: 22106041

3

Preprocessing of tandem mass spectrometric data based on decision tree classification.

Zhang JF, He SM, Cai JJ, Cao XJ, Sun RX, Fu Y, Zeng R, Gao W. Zhang JF, et al. Genomics Proteomics Bioinformatics. 2005 Nov;3(4):231-7. doi: 10.1016/s1672-0229(05)03032-9. Genomics Proteomics Bioinformatics. 2005. PMID: 16689691 Free PMC article.

4

Predicting molecular formulas of fragment ions with isotope patterns in tandem mass spectra.

Zhang J, Gao W, Cai J, He S, Zeng R, Chen R. Zhang J, et al. IEEE/ACM Trans Comput Biol Bioinform. 2005 Jul-Sep;2(3):217-30. doi: 10.1109/TCBB.2005.43. IEEE/ACM Trans Comput Biol Bioinform. 2005. PMID: 17044185

5

PeakSelect: preprocessing tandem mass spectra for better peptide identification.

Zhang J, He S, Ling CX, Cao X, Zeng R, Gao W. Zhang J, et al. Rapid Commun Mass Spectrom. 2008 Apr;22(8):1203-12. doi: 10.1002/rcm.3488. Rapid Commun Mass Spectrom. 2008. PMID: 18350561

6

Isotope pattern vector based tandem mass spectral data calibration for improved peptide and protein identification.

Zhang J, Xu D, Gao W, Lin G, He S. Zhang J, et al. Rapid Commun Mass Spectrom. 2009 Nov;23(21):3448-56. doi: 10.1002/rcm.4272. Rapid Commun Mass Spectrom. 2009. PMID: 19813282

7

An iterative algorithm to quantify factors influencing peptide fragmentation during tandem mass spectrometry.

Yu C, Lin Y, Sun S, Cai J, Zhang J, Bu D, Zhang Z, Chen R. Yu C, et al. J Bioinform Comput Biol. 2007 Apr;5(2a):297-311. doi: 10.1142/s0219720007002643. J Bioinform Comput Biol. 2007. PMID: 17589963

8

Deriving the probabilities of water loss and ammonia loss for amino acids from tandem mass spectra.

Sun S, Yu C, Qiao Y, Lin Y, Dong G, Liu C, Zhang J, Zhang Z, Cai J, Zhang H, Bu D. Sun S, et al. J Proteome Res. 2008 Jan;7(1):202-8. doi: 10.1021/pr070479v. Epub 2007 Dec 20. J Proteome Res. 2008. PMID: 18092745

9

An iterative algorithm to quantify the factors influencing peptide fragmentation for MS/MS spectrum.

Yu C, Lin Y, Sun S, Cai J, Zhang J, Zhang Z, Chen R, Bu D. Yu C, et al. Comput Syst Bioinformatics Conf. 2006:353-60. Comput Syst Bioinformatics Conf. 2006. PMID: 17369654 Free article.

10

The interactome as a tree--an attempt to visualize the protein-protein interaction network in yeast.

Lu H, Zhu X, Liu H, Skogerbø G, Zhang J, Zhang Y, Cai L, Zhao Y, Sun S, Xu J, Bu D, Chen R. Lu H, et al. Nucleic Acids Res. 2004 Sep 8;32(16):4804-11. doi: 10.1093/nar/gkh814. Print 2004. Nucleic Acids Res. 2004. PMID: 15356297 Free PMC article.

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