Sun RX - Search Results

1

pFind 2.0: a software package for peptide and protein identification via tandem mass spectrometry.

Wang LH, Li DQ, Fu Y, Wang HP, Zhang JF, Yuan ZF, Sun RX, Zeng R, He SM, Gao W. Wang LH, et al. Among authors: sun rx. Rapid Commun Mass Spectrom. 2007;21(18):2985-91. doi: 10.1002/rcm.3173. Rapid Commun Mass Spectrom. 2007. PMID: 17702057

2

Exploiting the kernel trick to correlate fragment ions for peptide identification via tandem mass spectrometry.

Fu Y, Yang Q, Sun R, Li D, Zeng R, Ling CX, Gao W. Fu Y, et al. Bioinformatics. 2004 Aug 12;20(12):1948-54. doi: 10.1093/bioinformatics/bth186. Epub 2004 Mar 25. Bioinformatics. 2004. PMID: 15044235

3

pFind: a novel database-searching software system for automated peptide and protein identification via tandem mass spectrometry.

Li D, Fu Y, Sun R, Ling CX, Wei Y, Zhou H, Zeng R, Yang Q, He S, Gao W. Li D, et al. Bioinformatics. 2005 Jul 1;21(13):3049-50. doi: 10.1093/bioinformatics/bti439. Epub 2005 Apr 7. Bioinformatics. 2005. PMID: 15817687

4

Preprocessing of tandem mass spectrometric data based on decision tree classification.

Zhang JF, He SM, Cai JJ, Cao XJ, Sun RX, Fu Y, Zeng R, Gao W. Zhang JF, et al. Among authors: sun rx. Genomics Proteomics Bioinformatics. 2005 Nov;3(4):231-7. doi: 10.1016/s1672-0229(05)03032-9. Genomics Proteomics Bioinformatics. 2005. PMID: 16689691 Free PMC article.

5

IndexToolkit: an open source toolbox to index protein databases for high-throughput proteomics.

Li D, Gao W, Ling CX, Wang X, Sun R, He S. Li D, et al. Bioinformatics. 2006 Oct 15;22(20):2572-3. doi: 10.1093/bioinformatics/btl410. Epub 2006 Aug 31. Bioinformatics. 2006. PMID: 16945944

6

An SVM scorer for more sensitive and reliable peptide identification via tandem mass spectrometry.

Wang H, Fu Y, Sun R, He S, Zeng R, Gao W. Wang H, et al. Pac Symp Biocomput. 2006:303-14. Pac Symp Biocomput. 2006. PMID: 17094248 Free article.

7

Mining tandem mass spectral data to develop a more accurate mass error model for peptide identification.

Fu Y, Gao W, He S, Sun R, Zhou H, Zeng R. Fu Y, et al. Pac Symp Biocomput. 2007:421-32. Pac Symp Biocomput. 2007. PMID: 17990507 Free article.

8

Efficient discovery of abundant post-translational modifications and spectral pairs using peptide mass and retention time differences.

Fu Y, Jia W, Lu Z, Wang H, Yuan Z, Chi H, Li Y, Xiu L, Wang W, Liu C, Wang L, Sun R, Gao W, Qian X, He SM. Fu Y, et al. BMC Bioinformatics. 2009 Jan 30;10 Suppl 1(Suppl 1):S50. doi: 10.1186/1471-2105-10-S1-S50. BMC Bioinformatics. 2009. PMID: 19208153 Free PMC article.

9

Speeding up tandem mass spectrometry based database searching by peptide and spectrum indexing.

Li Y, Chi H, Wang LH, Wang HP, Fu Y, Yuan ZF, Li SJ, Liu YS, Sun RX, Zeng R, He SM. Li Y, et al. Among authors: sun rx. Rapid Commun Mass Spectrom. 2010 Mar;24(6):807-14. doi: 10.1002/rcm.4448. Rapid Commun Mass Spectrom. 2010. PMID: 20187083

10

pNovo: de novo peptide sequencing and identification using HCD spectra.

Chi H, Sun RX, Yang B, Song CQ, Wang LH, Liu C, Fu Y, Yuan ZF, Wang HP, He SM, Dong MQ. Chi H, et al. Among authors: sun rx. J Proteome Res. 2010 May 7;9(5):2713-24. doi: 10.1021/pr100182k. J Proteome Res. 2010. PMID: 20329752 Free article.

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