Xu H - Search Results

1

Arkin IT, Xu H, Jensen MØ, Arbely E, Bennett ER, Bowers KJ, Chow E, Dror RO, Eastwood MP, Flitman-Tene R, Gregersen BA, Klepeis JL, Kolossváry I, Shan Y, Shaw DE. Arkin IT, et al. Among authors: xu h. Science. 2007 Aug 10;317(5839):799-803. doi: 10.1126/science.1142824. Science. 2007. PMID: 17690293

2

Microsecond molecular dynamics simulation shows effect of slow loop dynamics on backbone amide order parameters of proteins.

Maragakis P, Lindorff-Larsen K, Eastwood MP, Dror RO, Klepeis JL, Arkin IT, Jensen MØ, Xu H, Trbovic N, Friesner RA, Palmer AG III, Shaw DE. Maragakis P, et al. Among authors: xu h. J Phys Chem B. 2008 May 15;112(19):6155-8. doi: 10.1021/jp077018h. Epub 2008 Mar 1. J Phys Chem B. 2008. PMID: 18311962 Free PMC article.

3

Dynamic control of slow water transport by aquaporin 0: implications for hydration and junction stability in the eye lens.

Jensen MØ, Dror RO, Xu H, Borhani DW, Arkin IT, Eastwood MP, Shaw DE. Jensen MØ, et al. Among authors: xu h. Proc Natl Acad Sci U S A. 2008 Sep 23;105(38):14430-5. doi: 10.1073/pnas.0802401105. Epub 2008 Sep 11. Proc Natl Acad Sci U S A. 2008. PMID: 18787121 Free PMC article.

4

A conserved protonation-dependent switch controls drug binding in the Abl kinase.

Shan Y, Seeliger MA, Eastwood MP, Frank F, Xu H, Jensen MØ, Dror RO, Kuriyan J, Shaw DE. Shan Y, et al. Among authors: xu h. Proc Natl Acad Sci U S A. 2009 Jan 6;106(1):139-44. doi: 10.1073/pnas.0811223106. Epub 2008 Dec 24. Proc Natl Acad Sci U S A. 2009. PMID: 19109437 Free PMC article.

5

Minimizing thermodynamic length to select intermediate states for free-energy calculations and replica-exchange simulations.

Shenfeld DK, Xu H, Eastwood MP, Dror RO, Shaw DE. Shenfeld DK, et al. Among authors: xu h. Phys Rev E Stat Nonlin Soft Matter Phys. 2009 Oct;80(4 Pt 2):046705. doi: 10.1103/PhysRevE.80.046705. Epub 2009 Oct 19. Phys Rev E Stat Nonlin Soft Matter Phys. 2009. PMID: 19905480

6

Pathway and mechanism of drug binding to G-protein-coupled receptors.

Dror RO, Pan AC, Arlow DH, Borhani DW, Maragakis P, Shan Y, Xu H, Shaw DE. Dror RO, et al. Among authors: xu h. Proc Natl Acad Sci U S A. 2011 Aug 9;108(32):13118-23. doi: 10.1073/pnas.1104614108. Epub 2011 Jul 21. Proc Natl Acad Sci U S A. 2011. PMID: 21778406 Free PMC article.

7

Activation mechanism of the β2-adrenergic receptor.

Dror RO, Arlow DH, Maragakis P, Mildorf TJ, Pan AC, Xu H, Borhani DW, Shaw DE. Dror RO, et al. Among authors: xu h. Proc Natl Acad Sci U S A. 2011 Nov 15;108(46):18684-9. doi: 10.1073/pnas.1110499108. Epub 2011 Oct 26. Proc Natl Acad Sci U S A. 2011. PMID: 22031696 Free PMC article.

8

Biomolecular simulation: a computational microscope for molecular biology.

Dror RO, Dirks RM, Grossman JP, Xu H, Shaw DE. Dror RO, et al. Among authors: xu h. Annu Rev Biophys. 2012;41:429-52. doi: 10.1146/annurev-biophys-042910-155245. Annu Rev Biophys. 2012. PMID: 22577825 Review.

9

Key mutations stabilize antigen-binding conformation during affinity maturation of a broadly neutralizing influenza antibody lineage.

Xu H, Schmidt AG, O'Donnell T, Therkelsen MD, Kepler TB, Moody MA, Haynes BF, Liao HX, Harrison SC, Shaw DE. Xu H, et al. Proteins. 2015 Apr;83(4):771-80. doi: 10.1002/prot.24745. Epub 2015 Feb 28. Proteins. 2015. PMID: 25524709 Free PMC article.

10

Improving Sampling by Exchanging Hamiltonians with Efficiently Configured Nonequilibrium Simulations.

Dirks RM, Xu H, Shaw DE. Dirks RM, et al. Among authors: xu h. J Chem Theory Comput. 2012 Jan 10;8(1):162-71. doi: 10.1021/ct200464v. Epub 2011 Dec 13. J Chem Theory Comput. 2012. PMID: 26592879

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