Hofacker IL - Search Results

1

Variations on RNA folding and alignment: lessons from Benasque.

Bompfünewerer AF, Backofen R, Bernhart SH, Hertel J, Hofacker IL, Stadler PF, Will S. Bompfünewerer AF, et al. Among authors: hofacker il. J Math Biol. 2008 Jan;56(1-2):129-44. doi: 10.1007/s00285-007-0107-5. Epub 2007 Jul 5. J Math Biol. 2008. PMID: 17611759

2

MicroRNA-Mediated Obstruction of Stem-loop Alternative Splicing (MIMOSAS): a global mechanism for the regulation of alternative splicing.

Zhai R, Ruan K, Perez GF, Kubat M, Liu J, Hofacker I, Wuchty S. Zhai R, et al. Res Sq [Preprint]. 2023 Jul 28:rs.3.rs-2977025. doi: 10.21203/rs.3.rs-2977025/v1. Res Sq. 2023. PMID: 37546804 Free PMC article. Preprint.

3

From sequences to shapes and back: a case study in RNA secondary structures.

Schuster P, Fontana W, Stadler PF, Hofacker IL. Schuster P, et al. Among authors: hofacker il. Proc Biol Sci. 1994 Mar 22;255(1344):279-84. doi: 10.1098/rspb.1994.0040. Proc Biol Sci. 1994. PMID: 7517565

4

Neutral networks in protein space: a computational study based on knowledge-based potentials of mean force.

Babajide A, Hofacker IL, Sippl MJ, Stadler PF. Babajide A, et al. Among authors: hofacker il. Fold Des. 1997;2(5):261-9. doi: 10.1016/S1359-0278(97)00037-0. Fold Des. 1997. PMID: 9261065

5

Automatic detection of conserved RNA structure elements in complete RNA virus genomes.

Hofacker IL, Fekete M, Flamm C, Huynen MA, Rauscher S, Stolorz PE, Stadler PF. Hofacker IL, et al. Nucleic Acids Res. 1998 Aug 15;26(16):3825-36. doi: 10.1093/nar/26.16.3825. Nucleic Acids Res. 1998. PMID: 9685502 Free PMC article.

6

Automatic detection of conserved base pairing patterns in RNA virus genomes.

Hofacker IL, Stadler PF. Hofacker IL, et al. Comput Chem. 1999 Jun 15;23(3-4):401-14. doi: 10.1016/s0097-8485(99)00013-3. Comput Chem. 1999. PMID: 10404627

7

RNA folding at elementary step resolution.

Flamm C, Fontana W, Hofacker IL, Schuster P. Flamm C, et al. Among authors: hofacker il. RNA. 2000 Mar;6(3):325-38. doi: 10.1017/s1355838200992161. RNA. 2000. PMID: 10744018 Free PMC article.

8

Prediction of RNA base pairing probabilities on massively parallel computers.

Fekete M, Hofacker IL, Stadler PF. Fekete M, et al. Among authors: hofacker il. J Comput Biol. 2000 Feb-Apr;7(1-2):171-82. doi: 10.1089/10665270050081441. J Comput Biol. 2000. PMID: 10890394

9

Design of multistable RNA molecules.

Flamm C, Hofacker IL, Maurer-Stroh S, Stadler PF, Zehl M. Flamm C, et al. Among authors: hofacker il. RNA. 2001 Feb;7(2):254-65. doi: 10.1017/s1355838201000863. RNA. 2001. PMID: 11233982 Free PMC article.

10

Exploring protein sequence space using knowledge-based potentials.

Babajide A, Farber R, Hofacker IL, Inman J, Lapedes AS, Stadler PF. Babajide A, et al. Among authors: hofacker il. J Theor Biol. 2001 Sep 7;212(1):35-46. doi: 10.1006/jtbi.2001.2343. J Theor Biol. 2001. PMID: 11527443

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