Nayak D - Search Results

1

Functional architecture of T7 RNA polymerase transcription complexes.

Nayak D, Guo Q, Sousa R. Nayak D, et al. J Mol Biol. 2007 Aug 10;371(2):490-500. doi: 10.1016/j.jmb.2007.05.070. Epub 2007 May 31. J Mol Biol. 2007. PMID: 17580086 Free PMC article.

2

Major conformational changes during T7RNAP transcription initiation coincide with, and are required for, promoter release.

Guo Q, Nayak D, Brieba LG, Sousa R. Guo Q, et al. Among authors: nayak d. J Mol Biol. 2005 Oct 21;353(2):256-70. doi: 10.1016/j.jmb.2005.08.016. J Mol Biol. 2005. PMID: 16169559

3

Mechanism of T7 RNAP pausing and termination at the T7 concatemer junction: a local change in transcription bubble structure drives a large change in transcription complex architecture.

Nayak D, Siller S, Guo Q, Sousa R. Nayak D, et al. J Mol Biol. 2008 Feb 15;376(2):541-53. doi: 10.1016/j.jmb.2007.11.090. Epub 2007 Dec 4. J Mol Biol. 2008. PMID: 18166198 Free PMC article.

4

A promoter recognition mechanism common to yeast mitochondrial and phage t7 RNA polymerases.

Nayak D, Guo Q, Sousa R. Nayak D, et al. J Biol Chem. 2009 May 15;284(20):13641-13647. doi: 10.1074/jbc.M900718200. Epub 2009 Mar 23. J Biol Chem. 2009. PMID: 19307179 Free PMC article.

5

Cys-pair reporters detect a constrained trigger loop in a paused RNA polymerase.

Nayak D, Voss M, Windgassen T, Mooney RA, Landick R. Nayak D, et al. Mol Cell. 2013 Jun 27;50(6):882-93. doi: 10.1016/j.molcel.2013.05.015. Epub 2013 Jun 13. Mol Cell. 2013. PMID: 23769674 Free PMC article.

6

Trigger loop of RNA polymerase is a positional, not acid-base, catalyst for both transcription and proofreading.

Mishanina TV, Palo MZ, Nayak D, Mooney RA, Landick R. Mishanina TV, et al. Among authors: nayak d. Proc Natl Acad Sci U S A. 2017 Jun 27;114(26):E5103-E5112. doi: 10.1073/pnas.1702383114. Epub 2017 Jun 12. Proc Natl Acad Sci U S A. 2017. PMID: 28607053 Free PMC article.

7

Trigger-helix folding pathway and SI3 mediate catalysis and hairpin-stabilized pausing by Escherichia coli RNA polymerase.

Windgassen TA, Mooney RA, Nayak D, Palangat M, Zhang J, Landick R. Windgassen TA, et al. Among authors: nayak d. Nucleic Acids Res. 2014 Nov 10;42(20):12707-21. doi: 10.1093/nar/gku997. Epub 2014 Oct 21. Nucleic Acids Res. 2014. PMID: 25336618 Free PMC article.

8

CBR antimicrobials inhibit RNA polymerase via at least two bridge-helix cap-mediated effects on nucleotide addition.

Bae B, Nayak D, Ray A, Mustaev A, Landick R, Darst SA. Bae B, et al. Among authors: nayak d. Proc Natl Acad Sci U S A. 2015 Aug 4;112(31):E4178-87. doi: 10.1073/pnas.1502368112. Epub 2015 Jul 20. Proc Natl Acad Sci U S A. 2015. PMID: 26195788 Free PMC article.

9

A pause sequence enriched at translation start sites drives transcription dynamics in vivo.

Larson MH, Mooney RA, Peters JM, Windgassen T, Nayak D, Gross CA, Block SM, Greenleaf WJ, Landick R, Weissman JS. Larson MH, et al. Among authors: nayak d. Science. 2014 May 30;344(6187):1042-7. doi: 10.1126/science.1251871. Epub 2014 May 1. Science. 2014. PMID: 24789973 Free PMC article.

10

The elemental mechanism of transcriptional pausing.

Saba J, Chua XY, Mishanina TV, Nayak D, Windgassen TA, Mooney RA, Landick R. Saba J, et al. Among authors: nayak d. Elife. 2019 Jan 8;8:e40981. doi: 10.7554/eLife.40981. Elife. 2019. PMID: 30618376 Free PMC article.

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My Custom Filters

Publication date

Text availability

Article attribute

Article type

Article Language

Species

Sex

Age

Other

686 results

Search Page

Filters