Doi A - Search Results

1

A combined pathway to simulate CDK-dependent phosphorylation and ARF-dependent stabilization for p53 transcriptional activity.

Doi A, Nagasaki M, Ueno K, Matsuno H, Miyano S. Doi A, et al. Genome Inform. 2006;17(1):112-23. Genome Inform. 2006. PMID: 17503361

2

Genomic Object Net: I. A platform for modelling and simulating biopathways.

Nagasaki M, Doi A, Matsuno H, Miyano S. Nagasaki M, et al. Among authors: doi a. Appl Bioinformatics. 2003;2(3):181-4. Appl Bioinformatics. 2003. PMID: 15130806

3

A versatile petri net based architecture for modeling and simulation of complex biological processes.

Nagasaki M, Doi A, Matsuno H, Miyano S. Nagasaki M, et al. Among authors: doi a. Genome Inform. 2004;15(1):180-97. Genome Inform. 2004. PMID: 15712121

4

Simulation-based validation of the p53 transcriptional activity with hybrid functional petri net.

Doi A, Nagasaki M, Matsuno H, Miyano S. Doi A, et al. In Silico Biol. 2006;6(1-2):1-13. In Silico Biol. 2006. PMID: 16789909

5

Automatic drawing of biological networks using cross cost and subcomponent data.

Kato M, Nagasaki M, Doi A, Miyano S. Kato M, et al. Among authors: doi a. Genome Inform. 2005;16(2):22-31. Genome Inform. 2005. PMID: 16901086

6

Genomic data assimilation for estimating hybrid functional Petri net from time-course gene expression data.

Nagasaki M, Yamaguchi R, Yoshida R, Imoto S, Doi A, Tamada Y, Matsuno H, Miyano S, Higuchi T. Nagasaki M, et al. Among authors: doi a. Genome Inform. 2006;17(1):46-61. Genome Inform. 2006. PMID: 17503355

7

A statistical framework for genome-wide discovery of biomarker splice variations with GeneChip Human Exon 1.0 ST Arrays.

Yoshida R, Numata K, Imoto S, Nagasaki M, Doi A, Ueno K, Miyano S. Yoshida R, et al. Among authors: doi a. Genome Inform. 2006;17(1):88-99. Genome Inform. 2006. PMID: 17503359

8

Constructing biological pathway models with hybrid functional petri nets.

Doi A, Fujita S, Matsuno H, Nagasaki M, Miyano S. Doi A, et al. Stud Health Technol Inform. 2011;162:92-112. Stud Health Technol Inform. 2011. PMID: 21685566

9

Simulation-Based Validation of the p53 Transcriptional Activity with Hybrid Functional Petri Net.

Doi A, Nagasaki M, Matsuno H, Miyano S. Doi A, et al. Stud Health Technol Inform. 2011;162:130-42. Stud Health Technol Inform. 2011. PMID: 21685569

10

Biopathways representation and simulation on hybrid functional Petri net.

Matsuno H, Tanaka Y, Aoshima H, Doi A, Matsui M, Miyano S. Matsuno H, et al. Among authors: doi a. In Silico Biol. 2003;3(3):389-404. In Silico Biol. 2003. PMID: 12954096

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