Agris PF - Search Results

1

Mechanism for expanding the decoding capacity of transfer RNAs by modification of uridines.

Weixlbaumer A, Murphy FV 4th, Dziergowska A, Malkiewicz A, Vendeix FA, Agris PF, Ramakrishnan V. Weixlbaumer A, et al. Among authors: agris pf. Nat Struct Mol Biol. 2007 Jun;14(6):498-502. doi: 10.1038/nsmb1242. Epub 2007 May 13. Nat Struct Mol Biol. 2007. PMID: 17496902 Free PMC article.

2

The role of modifications in codon discrimination by tRNA(Lys)UUU.

Murphy FV 4th, Ramakrishnan V, Malkiewicz A, Agris PF. Murphy FV 4th, et al. Among authors: agris pf. Nat Struct Mol Biol. 2004 Dec;11(12):1186-91. doi: 10.1038/nsmb861. Epub 2004 Nov 21. Nat Struct Mol Biol. 2004. PMID: 15558052

3

tRNA's wobble decoding of the genome: 40 years of modification.

Agris PF, Vendeix FA, Graham WD. Agris PF, et al. J Mol Biol. 2007 Feb 9;366(1):1-13. doi: 10.1016/j.jmb.2006.11.046. Epub 2006 Nov 15. J Mol Biol. 2007. PMID: 17187822 Review.

4

Human tRNA(Lys3)(UUU) is pre-structured by natural modifications for cognate and wobble codon binding through keto-enol tautomerism.

Vendeix FA, Murphy FV 4th, Cantara WA, Leszczyńska G, Gustilo EM, Sproat B, Malkiewicz A, Agris PF. Vendeix FA, et al. Among authors: agris pf. J Mol Biol. 2012 Mar 2;416(4):467-85. doi: 10.1016/j.jmb.2011.12.048. Epub 2011 Dec 29. J Mol Biol. 2012. PMID: 22227389 Free PMC article.

5

Modified nucleotides in tRNA(Lys) and tRNA(Val) are important for translocation.

Phelps SS, Malkiewicz A, Agris PF, Joseph S. Phelps SS, et al. Among authors: agris pf. J Mol Biol. 2004 Apr 30;338(3):439-44. doi: 10.1016/j.jmb.2004.02.070. J Mol Biol. 2004. PMID: 15081802

6

tRNA's modifications bring order to gene expression.

Gustilo EM, Vendeix FA, Agris PF. Gustilo EM, et al. Among authors: agris pf. Curr Opin Microbiol. 2008 Apr;11(2):134-40. doi: 10.1016/j.mib.2008.02.003. Epub 2008 Apr 2. Curr Opin Microbiol. 2008. PMID: 18378185 Free PMC article. Review.

7

Anticodon domain modifications contribute order to tRNA for ribosome-mediated codon binding.

Vendeix FA, Dziergowska A, Gustilo EM, Graham WD, Sproat B, Malkiewicz A, Agris PF. Vendeix FA, et al. Among authors: agris pf. Biochemistry. 2008 Jun 10;47(23):6117-29. doi: 10.1021/bi702356j. Epub 2008 May 13. Biochemistry. 2008. PMID: 18473483

8

The structure of the human tRNALys3 anticodon bound to the HIV genome is stabilized by modified nucleosides and adjacent mismatch base pairs.

Bilbille Y, Vendeix FA, Guenther R, Malkiewicz A, Ariza X, Vilarrasa J, Agris PF. Bilbille Y, et al. Among authors: agris pf. Nucleic Acids Res. 2009 Jun;37(10):3342-53. doi: 10.1093/nar/gkp187. Epub 2009 Mar 26. Nucleic Acids Res. 2009. PMID: 19324888 Free PMC article.

9

Free energy calculation of modified base-pair formation in explicit solvent: A predictive model.

Vendeix FA, Munoz AM, Agris PF. Vendeix FA, et al. Among authors: agris pf. RNA. 2009 Dec;15(12):2278-87. doi: 10.1261/rna.1734309. Epub 2009 Oct 27. RNA. 2009. PMID: 19861423 Free PMC article.

10

Functional recognition of the modified human tRNALys3(UUU) anticodon domain by HIV's nucleocapsid protein and a peptide mimic.

Graham WD, Barley-Maloney L, Stark CJ, Kaur A, Stolarchuk C, Sproat B, Leszczynska G, Malkiewicz A, Safwat N, Mucha P, Guenther R, Agris PF. Graham WD, et al. Among authors: agris pf. J Mol Biol. 2011 Jul 22;410(4):698-715. doi: 10.1016/j.jmb.2011.04.025. J Mol Biol. 2011. PMID: 21762809 Free PMC article.

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