Floudas CA - Search Results

1

Computational methods in protein structure prediction.

Floudas CA. Floudas CA. Biotechnol Bioeng. 2007 Jun 1;97(2):207-13. doi: 10.1002/bit.21411. Biotechnol Bioeng. 2007. PMID: 17455371

2

Ab initio prediction of the three-dimensional structure of a de novo designed protein: a double-blind case study.

Klepeis JL, Wei Y, Hecht MH, Floudas CA. Klepeis JL, et al. Among authors: floudas ca. Proteins. 2005 Feb 15;58(3):560-70. doi: 10.1002/prot.20338. Proteins. 2005. PMID: 15609306

3

Contact prediction for beta and alpha-beta proteins using integer linear optimization and its impact on the first principles 3D structure prediction method ASTRO-FOLD.

Rajgaria R, Wei Y, Floudas CA. Rajgaria R, et al. Among authors: floudas ca. Proteins. 2010 Jun;78(8):1825-46. doi: 10.1002/prot.22696. Proteins. 2010. PMID: 20225257 Free PMC article.

4

Structure prediction of loops with fixed and flexible stems.

Subramani A, Floudas CA. Subramani A, et al. Among authors: floudas ca. J Phys Chem B. 2012 Jun 14;116(23):6670-82. doi: 10.1021/jp2113957. Epub 2012 Mar 2. J Phys Chem B. 2012. PMID: 22352982 Free PMC article.

5

Theoretical and computational studies of the glucose signaling pathways in yeast using global gene expression data.

Lin X, Floudas CA, Wang Y, Broach JR. Lin X, et al. Among authors: floudas ca. Biotechnol Bioeng. 2003 Dec 30;84(7):864-86. doi: 10.1002/bit.10844. Biotechnol Bioeng. 2003. PMID: 14708127

6

Protein folding and de novo protein design for biotechnological applications.

Khoury GA, Smadbeck J, Kieslich CA, Floudas CA. Khoury GA, et al. Among authors: floudas ca. Trends Biotechnol. 2014 Feb;32(2):99-109. doi: 10.1016/j.tibtech.2013.10.008. Epub 2013 Nov 19. Trends Biotechnol. 2014. PMID: 24268901 Free PMC article. Review.

7

Protein loop structure prediction with flexible stem geometries.

Mönnigmann M, Floudas CA. Mönnigmann M, et al. Among authors: floudas ca. Proteins. 2005 Dec 1;61(4):748-62. doi: 10.1002/prot.20669. Proteins. 2005. PMID: 16222670

8

ASTRO-FOLD: a combinatorial and global optimization framework for Ab initio prediction of three-dimensional structures of proteins from the amino acid sequence.

Klepeis JL, Floudas CA. Klepeis JL, et al. Among authors: floudas ca. Biophys J. 2003 Oct;85(4):2119-46. doi: 10.1016/S0006-3495(03)74640-2. Biophys J. 2003. PMID: 14507680 Free PMC article.

9

Selecting high quality protein structures from diverse conformational ensembles.

Subramani A, DiMaggio PA Jr, Floudas CA. Subramani A, et al. Among authors: floudas ca. Biophys J. 2009 Sep 16;97(6):1728-36. doi: 10.1016/j.bpj.2009.06.046. Biophys J. 2009. PMID: 19751678 Free PMC article.

10

Alpha-helical topology prediction and generation of distance restraints in membrane proteins.

McAllister SR, Floudas CA. McAllister SR, et al. Among authors: floudas ca. Biophys J. 2008 Dec;95(11):5281-95. doi: 10.1529/biophysj.108.132241. Epub 2008 Sep 5. Biophys J. 2008. PMID: 18775963 Free PMC article.

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