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Quantifying the similarities within fold space.
Harrison A, Pearl F, Mott R, Thornton J, Orengo C. Harrison A, et al. Among authors: orengo c. J Mol Biol. 2002 Nov 8;323(5):909-26. doi: 10.1016/s0022-2836(02)00992-0. J Mol Biol. 2002. PMID: 12417203
Recognizing the fold of a protein structure.
Harrison A, Pearl F, Sillitoe I, Slidel T, Mott R, Thornton J, Orengo C. Harrison A, et al. Among authors: orengo c. Bioinformatics. 2003 Sep 22;19(14):1748-59. doi: 10.1093/bioinformatics/btg240. Bioinformatics. 2003. PMID: 14512345
The CATH Domain Structure Database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis.
Pearl F, Todd A, Sillitoe I, Dibley M, Redfern O, Lewis T, Bennett C, Marsden R, Grant A, Lee D, Akpor A, Maibaum M, Harrison A, Dallman T, Reeves G, Diboun I, Addou S, Lise S, Johnston C, Sillero A, Thornton J, Orengo C. Pearl F, et al. Among authors: orengo c. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D247-51. doi: 10.1093/nar/gki024. Nucleic Acids Res. 2005. PMID: 15608188 Free PMC article.
Outcome of a workshop on archiving structural models of biological macromolecules.
Berman HM, Burley SK, Chiu W, Sali A, Adzhubei A, Bourne PE, Bryant SH, Dunbrack RL Jr, Fidelis K, Frank J, Godzik A, Henrick K, Joachimiak A, Heymann B, Jones D, Markley JL, Moult J, Montelione GT, Orengo C, Rossmann MG, Rost B, Saibil H, Schwede T, Standley DM, Westbrook JD. Berman HM, et al. Among authors: orengo c. Structure. 2006 Aug;14(8):1211-7. doi: 10.1016/j.str.2006.06.005. Structure. 2006. PMID: 16955948 Free article. No abstract available.
Protein function annotation by homology-based inference.
Loewenstein Y, Raimondo D, Redfern OC, Watson J, Frishman D, Linial M, Orengo C, Thornton J, Tramontano A. Loewenstein Y, et al. Among authors: orengo c. Genome Biol. 2009 Feb 2;10(2):207. doi: 10.1186/gb-2009-10-2-207. Genome Biol. 2009. PMID: 19226439 Free PMC article. Review.
306 results