Ernst J - Search Results

1

Ernst J, Vainas O, Harbison CT, Simon I, Bar-Joseph Z. Ernst J, et al. Mol Syst Biol. 2007;3:74. doi: 10.1038/msb4100115. Epub 2007 Jan 16. Mol Syst Biol. 2007. PMID: 17224918 Free PMC article.

2

DREM 2.0: Improved reconstruction of dynamic regulatory networks from time-series expression data.

Schulz MH, Devanny WE, Gitter A, Zhong S, Ernst J, Bar-Joseph Z. Schulz MH, et al. Among authors: ernst j. BMC Syst Biol. 2012 Aug 16;6:104. doi: 10.1186/1752-0509-6-104. BMC Syst Biol. 2012. PMID: 22897824 Free PMC article.

3

Clustering short time series gene expression data.

Ernst J, Nau GJ, Bar-Joseph Z. Ernst J, et al. Bioinformatics. 2005 Jun;21 Suppl 1:i159-68. doi: 10.1093/bioinformatics/bti1022. Bioinformatics. 2005. PMID: 15961453

4

STEM: a tool for the analysis of short time series gene expression data.

Ernst J, Bar-Joseph Z. Ernst J, et al. BMC Bioinformatics. 2006 Apr 5;7:191. doi: 10.1186/1471-2105-7-191. BMC Bioinformatics. 2006. PMID: 16597342 Free PMC article.

5

A semi-supervised method for predicting transcription factor-gene interactions in Escherichia coli.

Ernst J, Beg QK, Kay KA, Balázsi G, Oltvai ZN, Bar-Joseph Z. Ernst J, et al. PLoS Comput Biol. 2008 Mar 28;4(3):e1000044. doi: 10.1371/journal.pcbi.1000044. PLoS Comput Biol. 2008. PMID: 18369434 Free PMC article.

6

Integrating multiple evidence sources to predict transcription factor binding in the human genome.

Ernst J, Plasterer HL, Simon I, Bar-Joseph Z. Ernst J, et al. Genome Res. 2010 Apr;20(4):526-36. doi: 10.1101/gr.096305.109. Epub 2010 Mar 10. Genome Res. 2010. PMID: 20219943 Free PMC article.

7

Combined static and dynamic analysis for determining the quality of time-series expression profiles.

Simon I, Siegfried Z, Ernst J, Bar-Joseph Z. Simon I, et al. Among authors: ernst j. Nat Biotechnol. 2005 Dec;23(12):1503-8. doi: 10.1038/nbt1164. Nat Biotechnol. 2005. PMID: 16333294

8

Intracellular crowding defines the mode and sequence of substrate uptake by Escherichia coli and constrains its metabolic activity.

Beg QK, Vazquez A, Ernst J, de Menezes MA, Bar-Joseph Z, Barabási AL, Oltvai ZN. Beg QK, et al. Among authors: ernst j. Proc Natl Acad Sci U S A. 2007 Jul 31;104(31):12663-8. doi: 10.1073/pnas.0609845104. Epub 2007 Jul 24. Proc Natl Acad Sci U S A. 2007. PMID: 17652176 Free PMC article.

9

IL-3 and oncogenic Abl regulate the myeloblast transcriptome by altering mRNA stability.

Ernst J, Ghanem L, Bar-Joseph Z, McNamara M, Brown J, Steinman RA. Ernst J, et al. PLoS One. 2009 Oct 15;4(10):e7469. doi: 10.1371/journal.pone.0007469. PLoS One. 2009. PMID: 19829692 Free PMC article.

10

Large scale comparison of innate responses to viral and bacterial pathogens in mouse and macaque.

Zinman G, Brower-Sinning R, Emeche CH, Ernst J, Huang GT, Mahony S, Myers AJ, O'Dee DM, Flynn JL, Nau GJ, Ross TM, Salter RD, Benos PV, Bar Joseph Z, Morel PA. Zinman G, et al. Among authors: ernst j. PLoS One. 2011;6(7):e22401. doi: 10.1371/journal.pone.0022401. Epub 2011 Jul 18. PLoS One. 2011. PMID: 21789257 Free PMC article.

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