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Protein-DNA binding specificity predictions with structural models.
Morozov AV, Havranek JJ, Baker D, Siggia ED. Morozov AV, et al. Among authors: havranek jj. Nucleic Acids Res. 2005 Oct 24;33(18):5781-98. doi: 10.1093/nar/gki875. Print 2005. Nucleic Acids Res. 2005. PMID: 16246914 Free PMC article.
Exploitation of binding energy for catalysis and design.
Thyme SB, Jarjour J, Takeuchi R, Havranek JJ, Ashworth J, Scharenberg AM, Stoddard BL, Baker D. Thyme SB, et al. Among authors: havranek jj. Nature. 2009 Oct 29;461(7268):1300-4. doi: 10.1038/nature08508. Nature. 2009. PMID: 19865174 Free PMC article.
Rosetta in CAPRI rounds 13-19.
Fleishman SJ, Corn JE, Strauch EM, Whitehead TA, Andre I, Thompson J, Havranek JJ, Das R, Bradley P, Baker D. Fleishman SJ, et al. Among authors: havranek jj. Proteins. 2010 Nov 15;78(15):3212-8. doi: 10.1002/prot.22784. Proteins. 2010. PMID: 20597089 Free PMC article.
Specificity in computational protein design.
Havranek JJ. Havranek JJ. J Biol Chem. 2010 Oct 8;285(41):31095-9. doi: 10.1074/jbc.R110.157685. Epub 2010 Jul 29. J Biol Chem. 2010. PMID: 20670934 Free PMC article. Review.
27 results