Baker D - Search Results

1

High-resolution structural and thermodynamic analysis of extreme stabilization of human procarboxypeptidase by computational protein design.

Dantas G, Corrent C, Reichow SL, Havranek JJ, Eletr ZM, Isern NG, Kuhlman B, Varani G, Merritt EA, Baker D. Dantas G, et al. Among authors: baker d. J Mol Biol. 2007 Mar 2;366(4):1209-21. doi: 10.1016/j.jmb.2006.11.080. Epub 2006 Dec 2. J Mol Biol. 2007. PMID: 17196978 Free PMC article.

2

Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions.

Simons KT, Kooperberg C, Huang E, Baker D. Simons KT, et al. Among authors: baker d. J Mol Biol. 1997 Apr 25;268(1):209-25. doi: 10.1006/jmbi.1997.0959. J Mol Biol. 1997. PMID: 9149153

3

Folding dynamics of the src SH3 domain.

Grantcharova VP, Baker D. Grantcharova VP, et al. Among authors: baker d. Biochemistry. 1997 Dec 16;36(50):15685-92. doi: 10.1021/bi971786p. Biochemistry. 1997. PMID: 9398297

4

Contrasting roles for symmetrically disposed beta-turns in the folding of a small protein.

Gu H, Kim D, Baker D. Gu H, et al. Among authors: baker d. J Mol Biol. 1997 Dec 12;274(4):588-96. doi: 10.1006/jmbi.1997.1374. J Mol Biol. 1997. PMID: 9417937

5

Simplified proteins: minimalist solutions to the 'protein folding problem'.

Plaxco KW, Riddle DS, Grantcharova V, Baker D. Plaxco KW, et al. Among authors: baker d. Curr Opin Struct Biol. 1998 Feb;8(1):80-5. doi: 10.1016/s0959-440x(98)80013-4. Curr Opin Struct Biol. 1998. PMID: 9519299 Review.

6

Contact order, transition state placement and the refolding rates of single domain proteins.

Plaxco KW, Simons KT, Baker D. Plaxco KW, et al. Among authors: baker d. J Mol Biol. 1998 Apr 10;277(4):985-94. doi: 10.1006/jmbi.1998.1645. J Mol Biol. 1998. PMID: 9545386

7

Prediction of local structure in proteins using a library of sequence-structure motifs.

Bystroff C, Baker D. Bystroff C, et al. Among authors: baker d. J Mol Biol. 1998 Aug 21;281(3):565-77. doi: 10.1006/jmbi.1998.1943. J Mol Biol. 1998. PMID: 9698570

8

Prediction and structural characterization of an independently folding substructure in the src SH3 domain.

Yi Q, Bystroff C, Rajagopal P, Klevit RE, Baker D. Yi Q, et al. Among authors: baker d. J Mol Biol. 1998;283(1):293-300. doi: 10.1006/jmbi.1998.2072. J Mol Biol. 1998. PMID: 9761691

9

The single helix in protein L is largely disrupted at the rate-limiting step in folding.

Kim DE, Yi Q, Gladwin ST, Goldberg JM, Baker D. Kim DE, et al. Among authors: baker d. J Mol Biol. 1998 Dec 4;284(3):807-15. doi: 10.1006/jmbi.1998.2200. J Mol Biol. 1998. PMID: 9826517

10

Matching theory and experiment in protein folding.

Alm E, Baker D. Alm E, et al. Among authors: baker d. Curr Opin Struct Biol. 1999 Apr;9(2):189-96. doi: 10.1016/S0959-440X(99)80027-X. Curr Opin Struct Biol. 1999. PMID: 10322214 Review.

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