Ideker T - Search Results

1

Discovering regulated networks during HIV-1 latency and reactivation.

Bandyopadhyay S, Kelley R, Ideker T. Bandyopadhyay S, et al. Among authors: ideker t. Pac Symp Biocomput. 2006:354-66. Pac Symp Biocomput. 2006. PMID: 17094252 Free PMC article.

2

Integrating phenotypic and expression profiles to map arsenic-response networks.

Haugen AC, Kelley R, Collins JB, Tucker CJ, Deng C, Afshari CA, Brown JM, Ideker T, Van Houten B. Haugen AC, et al. Among authors: ideker t. Genome Biol. 2004;5(12):R95. doi: 10.1186/gb-2004-5-12-r95. Epub 2004 Nov 29. Genome Biol. 2004. PMID: 15575969 Free PMC article.

3

Conserved patterns of protein interaction in multiple species.

Sharan R, Suthram S, Kelley RM, Kuhn T, McCuine S, Uetz P, Sittler T, Karp RM, Ideker T. Sharan R, et al. Among authors: ideker t. Proc Natl Acad Sci U S A. 2005 Feb 8;102(6):1974-9. doi: 10.1073/pnas.0409522102. Epub 2005 Feb 1. Proc Natl Acad Sci U S A. 2005. PMID: 15687504 Free PMC article.

4

Systematic interpretation of genetic interactions using protein networks.

Kelley R, Ideker T. Kelley R, et al. Among authors: ideker t. Nat Biotechnol. 2005 May;23(5):561-6. doi: 10.1038/nbt1096. Nat Biotechnol. 2005. PMID: 15877074 Free PMC article.

5

Systematic identification of functional orthologs based on protein network comparison.

Bandyopadhyay S, Sharan R, Ideker T. Bandyopadhyay S, et al. Among authors: ideker t. Genome Res. 2006 Mar;16(3):428-35. doi: 10.1101/gr.4526006. Genome Res. 2006. PMID: 16510899 Free PMC article.

6

Correcting for gene-specific dye bias in DNA microarrays using the method of maximum likelihood.

Kelley R, Feizi H, Ideker T. Kelley R, et al. Among authors: ideker t. Bioinformatics. 2008 Jan 1;24(1):71-7. doi: 10.1093/bioinformatics/btm347. Epub 2007 Jul 10. Bioinformatics. 2008. PMID: 17623705 Free PMC article.

7

Integrating physical and genetic maps: from genomes to interaction networks.

Beyer A, Bandyopadhyay S, Ideker T. Beyer A, et al. Among authors: ideker t. Nat Rev Genet. 2007 Sep;8(9):699-710. doi: 10.1038/nrg2144. Nat Rev Genet. 2007. PMID: 17703239 Free PMC article. Review.

8

Network-based classification of breast cancer metastasis.

Chuang HY, Lee E, Liu YT, Lee D, Ideker T. Chuang HY, et al. Among authors: ideker t. Mol Syst Biol. 2007;3:140. doi: 10.1038/msb4100180. Epub 2007 Oct 16. Mol Syst Biol. 2007. PMID: 17940530 Free PMC article.

9

Integration of biological networks and gene expression data using Cytoscape.

Cline MS, Smoot M, Cerami E, Kuchinsky A, Landys N, Workman C, Christmas R, Avila-Campilo I, Creech M, Gross B, Hanspers K, Isserlin R, Kelley R, Killcoyne S, Lotia S, Maere S, Morris J, Ono K, Pavlovic V, Pico AR, Vailaya A, Wang PL, Adler A, Conklin BR, Hood L, Kuiper M, Sander C, Schmulevich I, Schwikowski B, Warner GJ, Ideker T, Bader GD. Cline MS, et al. Among authors: ideker t. Nat Protoc. 2007;2(10):2366-82. doi: 10.1038/nprot.2007.324. Nat Protoc. 2007. PMID: 17947979 Free PMC article.

10

Functional maps of protein complexes from quantitative genetic interaction data.

Bandyopadhyay S, Kelley R, Krogan NJ, Ideker T. Bandyopadhyay S, et al. Among authors: ideker t. PLoS Comput Biol. 2008 Apr 18;4(4):e1000065. doi: 10.1371/journal.pcbi.1000065. PLoS Comput Biol. 2008. PMID: 18421374 Free PMC article.

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