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A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB.
Rayner TF, Rocca-Serra P, Spellman PT, Causton HC, Farne A, Holloway E, Irizarry RA, Liu J, Maier DS, Miller M, Petersen K, Quackenbush J, Sherlock G, Stoeckert CJ Jr, White J, Whetzel PL, Wymore F, Parkinson H, Sarkans U, Ball CA, Brazma A. Rayner TF, et al. Among authors: wymore f. BMC Bioinformatics. 2006 Nov 6;7:489. doi: 10.1186/1471-2105-7-489. BMC Bioinformatics. 2006. PMID: 17087822 Free PMC article.
The XBabelPhish MAGE-ML and XML translator.
Maier D, Wymore F, Sherlock G, Ball CA. Maier D, et al. Among authors: wymore f. BMC Bioinformatics. 2008 Jan 18;9:28. doi: 10.1186/1471-2105-9-28. BMC Bioinformatics. 2008. PMID: 18205924 Free PMC article.
The Stanford Microarray Database: implementation of new analysis tools and open source release of software.
Demeter J, Beauheim C, Gollub J, Hernandez-Boussard T, Jin H, Maier D, Matese JC, Nitzberg M, Wymore F, Zachariah ZK, Brown PO, Sherlock G, Ball CA. Demeter J, et al. Among authors: wymore f. Nucleic Acids Res. 2007 Jan;35(Database issue):D766-70. doi: 10.1093/nar/gkl1019. Epub 2006 Dec 20. Nucleic Acids Res. 2007. PMID: 17182626 Free PMC article.
Implementation of GenePattern within the Stanford Microarray Database.
Hubble J, Demeter J, Jin H, Mao M, Nitzberg M, Reddy TB, Wymore F, Zachariah ZK, Sherlock G, Ball CA. Hubble J, et al. Among authors: wymore f. Nucleic Acids Res. 2009 Jan;37(Database issue):D898-901. doi: 10.1093/nar/gkn786. Epub 2008 Oct 25. Nucleic Acids Res. 2009. PMID: 18953035 Free PMC article.
TB database 2010: overview and update.
Galagan JE, Sisk P, Stolte C, Weiner B, Koehrsen M, Wymore F, Reddy TB, Zucker JD, Engels R, Gellesch M, Hubble J, Jin H, Larson L, Mao M, Nitzberg M, White J, Zachariah ZK, Sherlock G, Ball CA, Schoolnik GK. Galagan JE, et al. Among authors: wymore f. Tuberculosis (Edinb). 2010 Jul;90(4):225-35. doi: 10.1016/j.tube.2010.03.010. Epub 2010 May 20. Tuberculosis (Edinb). 2010. PMID: 20488753 Review.
PortEco: a resource for exploring bacterial biology through high-throughput data and analysis tools.
Hu JC, Sherlock G, Siegele DA, Aleksander SA, Ball CA, Demeter J, Gouni S, Holland TA, Karp PD, Lewis JE, Liles NM, McIntosh BK, Mi H, Muruganujan A, Wymore F, Thomas PD, Altman T. Hu JC, et al. Among authors: wymore f. Nucleic Acids Res. 2014 Jan;42(Database issue):D677-84. doi: 10.1093/nar/gkt1203. Epub 2013 Nov 26. Nucleic Acids Res. 2014. PMID: 24285306 Free PMC article.
The Aspergillus Genome Database: multispecies curation and incorporation of RNA-Seq data to improve structural gene annotations.
Cerqueira GC, Arnaud MB, Inglis DO, Skrzypek MS, Binkley G, Simison M, Miyasato SR, Binkley J, Orvis J, Shah P, Wymore F, Sherlock G, Wortman JR. Cerqueira GC, et al. Among authors: wymore f. Nucleic Acids Res. 2014 Jan;42(Database issue):D705-10. doi: 10.1093/nar/gkt1029. Epub 2013 Nov 4. Nucleic Acids Res. 2014. PMID: 24194595 Free PMC article.
15 results