Shlomi T - Search Results

1

A direct comparison of protein interaction confidence assignment schemes.

Suthram S, Shlomi T, Ruppin E, Sharan R, Ideker T. Suthram S, et al. Among authors: shlomi t. BMC Bioinformatics. 2006 Jul 26;7:360. doi: 10.1186/1471-2105-7-360. BMC Bioinformatics. 2006. PMID: 16872496 Free PMC article.

2

QPath: a method for querying pathways in a protein-protein interaction network.

Shlomi T, Segal D, Ruppin E, Sharan R. Shlomi T, et al. BMC Bioinformatics. 2006 Apr 10;7:199. doi: 10.1186/1471-2105-7-199. BMC Bioinformatics. 2006. PMID: 16606460 Free PMC article.

3

QNet: a tool for querying protein interaction networks.

Dost B, Shlomi T, Gupta N, Ruppin E, Bafna V, Sharan R. Dost B, et al. Among authors: shlomi t. J Comput Biol. 2008 Sep;15(7):913-25. doi: 10.1089/cmb.2007.0172. J Comput Biol. 2008. PMID: 18707533

4

Transcriptional regulation of protein complexes within and across species.

Tan K, Shlomi T, Feizi H, Ideker T, Sharan R. Tan K, et al. Among authors: shlomi t. Proc Natl Acad Sci U S A. 2007 Jan 23;104(4):1283-8. doi: 10.1073/pnas.0606914104. Epub 2007 Jan 16. Proc Natl Acad Sci U S A. 2007. PMID: 17227853 Free PMC article.

5

Constraint-based functional similarity of metabolic genes: going beyond network topology.

Rokhlenko O, Shlomi T, Sharan R, Ruppin E, Pinter RY. Rokhlenko O, et al. Among authors: shlomi t. Bioinformatics. 2007 Aug 15;23(16):2139-46. doi: 10.1093/bioinformatics/btm319. Epub 2007 Jun 22. Bioinformatics. 2007. PMID: 17586548

6

Pepitope: epitope mapping from affinity-selected peptides.

Mayrose I, Penn O, Erez E, Rubinstein ND, Shlomi T, Freund NT, Bublil EM, Ruppin E, Sharan R, Gershoni JM, Martz E, Pupko T. Mayrose I, et al. Among authors: shlomi t. Bioinformatics. 2007 Dec 1;23(23):3244-6. doi: 10.1093/bioinformatics/btm493. Epub 2007 Oct 31. Bioinformatics. 2007. PMID: 17977889 Free PMC article.

7

Network-based prediction of metabolic enzymes' subcellular localization.

Mintz-Oron S, Aharoni A, Ruppin E, Shlomi T. Mintz-Oron S, et al. Among authors: shlomi t. Bioinformatics. 2009 Jun 15;25(12):i247-52. doi: 10.1093/bioinformatics/btp209. Bioinformatics. 2009. PMID: 19477995 Free PMC article.

8

Associating genes and protein complexes with disease via network propagation.

Vanunu O, Magger O, Ruppin E, Shlomi T, Sharan R. Vanunu O, et al. Among authors: shlomi t. PLoS Comput Biol. 2010 Jan 15;6(1):e1000641. doi: 10.1371/journal.pcbi.1000641. PLoS Comput Biol. 2010. PMID: 20090828 Free PMC article.

9

Conservation of expression and sequence of metabolic genes is reflected by activity across metabolic states.

Bilu Y, Shlomi T, Barkai N, Ruppin E. Bilu Y, et al. Among authors: shlomi t. PLoS Comput Biol. 2006 Aug 18;2(8):e106. doi: 10.1371/journal.pcbi.0020106. Epub 2006 Jul 6. PLoS Comput Biol. 2006. PMID: 16933982 Free PMC article.

10

Gene loss rate: a probabilistic measure for the conservation of eukaryotic genes.

Borenstein E, Shlomi T, Ruppin E, Sharan R. Borenstein E, et al. Among authors: shlomi t. Nucleic Acids Res. 2007;35(1):e7. doi: 10.1093/nar/gkl792. Epub 2006 Dec 7. Nucleic Acids Res. 2007. PMID: 17158152 Free PMC article.

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