Kadota K - Search Results

1

ROKU: a novel method for identification of tissue-specific genes.

Kadota K, Ye J, Nakai Y, Terada T, Shimizu K. Kadota K, et al. BMC Bioinformatics. 2006 Jun 12;7:294. doi: 10.1186/1471-2105-7-294. BMC Bioinformatics. 2006. PMID: 16764735 Free PMC article.

2

Evaluating methods for ranking differentially expressed genes applied to microArray quality control data.

Kadota K, Shimizu K. Kadota K, et al. BMC Bioinformatics. 2011 Jun 6;12:227. doi: 10.1186/1471-2105-12-227. BMC Bioinformatics. 2011. PMID: 21639945 Free PMC article.

3

TCC: an R package for comparing tag count data with robust normalization strategies.

Sun J, Nishiyama T, Shimizu K, Kadota K. Sun J, et al. Among authors: kadota k. BMC Bioinformatics. 2013 Jul 9;14:219. doi: 10.1186/1471-2105-14-219. BMC Bioinformatics. 2013. PMID: 23837715 Free PMC article.

4

Evaluation of methods for differential expression analysis on multi-group RNA-seq count data.

Tang M, Sun J, Shimizu K, Kadota K. Tang M, et al. Among authors: kadota k. BMC Bioinformatics. 2015 Nov 4;16:361. doi: 10.1186/s12859-015-0794-7. BMC Bioinformatics. 2015. PMID: 26538400 Free PMC article.

5

Differential expression analysis using a model-based gene clustering algorithm for RNA-seq data.

Osabe T, Shimizu K, Kadota K. Osabe T, et al. Among authors: kadota k. BMC Bioinformatics. 2021 Oct 20;22(1):511. doi: 10.1186/s12859-021-04438-4. BMC Bioinformatics. 2021. PMID: 34670485 Free PMC article.

6

GOGOT: a method for the identification of differentially expressed fragments from cDNA-AFLP data.

Kadota K, Araki R, Nakai Y, Abe M. Kadota K, et al. Algorithms Mol Biol. 2007 May 30;2:5. doi: 10.1186/1748-7188-2-5. Algorithms Mol Biol. 2007. PMID: 17535446 Free PMC article.

7

Up-regulation of genes related to the ubiquitin-proteasome system in the brown adipose tissue of 24-h-fasted rats.

Nakai Y, Hashida H, Kadota K, Minami M, Shimizu K, Matsumoto I, Kato H, Abe K. Nakai Y, et al. Among authors: kadota k. Biosci Biotechnol Biochem. 2008 Jan;72(1):139-48. doi: 10.1271/bbb.70508. Epub 2008 Jan 7. Biosci Biotechnol Biochem. 2008. PMID: 18175912 Free article.

8

Biochemical and genomic analysis of neoculin compared to monocot mannose-binding lectins.

Shimizu-Ibuka A, Nakai Y, Nakamori K, Morita Y, Nakajima K, Kadota K, Watanabe H, Okubo S, Terada T, Asakura T, Misaka T, Abe K. Shimizu-Ibuka A, et al. Among authors: kadota k. J Agric Food Chem. 2008 Jul 9;56(13):5338-44. doi: 10.1021/jf800214b. Epub 2008 Jun 7. J Agric Food Chem. 2008. PMID: 18537258

9

A weighted average difference method for detecting differentially expressed genes from microarray data.

Kadota K, Nakai Y, Shimizu K. Kadota K, et al. Algorithms Mol Biol. 2008 Jun 26;3:8. doi: 10.1186/1748-7188-3-8. Algorithms Mol Biol. 2008. PMID: 18578891 Free PMC article.

10

Ranking differentially expressed genes from Affymetrix gene expression data: methods with reproducibility, sensitivity, and specificity.

Kadota K, Nakai Y, Shimizu K. Kadota K, et al. Algorithms Mol Biol. 2009 Apr 22;4:7. doi: 10.1186/1748-7188-4-7. Algorithms Mol Biol. 2009. PMID: 19386098 Free PMC article.

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