Workman CT - Search Results

1

A systems approach to mapping DNA damage response pathways.

Workman CT, Mak HC, McCuine S, Tagne JB, Agarwal M, Ozier O, Begley TJ, Samson LD, Ideker T. Workman CT, et al. Science. 2006 May 19;312(5776):1054-9. doi: 10.1126/science.1122088. Science. 2006. PMID: 16709784 Free PMC article.

2

Validation and refinement of gene-regulatory pathways on a network of physical interactions.

Yeang CH, Mak HC, McCuine S, Workman C, Jaakkola T, Ideker T. Yeang CH, et al. Genome Biol. 2005;6(7):R62. doi: 10.1186/gb-2005-6-7-r62. Epub 2005 Jul 1. Genome Biol. 2005. PMID: 15998451 Free PMC article.

3

Integrated assessment and prediction of transcription factor binding.

Beyer A, Workman C, Hollunder J, Radke D, Möller U, Wilhelm T, Ideker T. Beyer A, et al. PLoS Comput Biol. 2006 Jun 16;2(6):e70. doi: 10.1371/journal.pcbi.0020070. Epub 2006 Jun 16. PLoS Comput Biol. 2006. PMID: 16789814 Free PMC article.

4

enoLOGOS: a versatile web tool for energy normalized sequence logos.

Workman CT, Yin Y, Corcoran DL, Ideker T, Stormo GD, Benos PV. Workman CT, et al. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W389-92. doi: 10.1093/nar/gki439. Nucleic Acids Res. 2005. PMID: 15980495 Free PMC article.

5

Integration of biological networks and gene expression data using Cytoscape.

Cline MS, Smoot M, Cerami E, Kuchinsky A, Landys N, Workman C, Christmas R, Avila-Campilo I, Creech M, Gross B, Hanspers K, Isserlin R, Kelley R, Killcoyne S, Lotia S, Maere S, Morris J, Ono K, Pavlovic V, Pico AR, Vailaya A, Wang PL, Adler A, Conklin BR, Hood L, Kuiper M, Sander C, Schmulevich I, Schwikowski B, Warner GJ, Ideker T, Bader GD. Cline MS, et al. Nat Protoc. 2007;2(10):2366-82. doi: 10.1038/nprot.2007.324. Nat Protoc. 2007. PMID: 17947979 Free PMC article.

6

Predicting functionality of protein-DNA interactions by integrating diverse evidence.

Ucar D, Beyer A, Parthasarathy S, Workman CT. Ucar D, et al. Among authors: workman ct. Bioinformatics. 2009 Jun 15;25(12):i137-44. doi: 10.1093/bioinformatics/btp213. Bioinformatics. 2009. PMID: 19477979 Free PMC article.

7

A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana.

Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. Lindemose S, et al. Among authors: workman ct. Nucleic Acids Res. 2014 Jul;42(12):7681-93. doi: 10.1093/nar/gku502. Epub 2014 Jun 9. Nucleic Acids Res. 2014. PMID: 24914054 Free PMC article.

8

DASS: efficient discovery and p-value calculation of substructures in unordered data.

Hollunder J, Friedel M, Beyer A, Workman CT, Wilhelm T. Hollunder J, et al. Among authors: workman ct. Bioinformatics. 2007 Jan 1;23(1):77-83. doi: 10.1093/bioinformatics/btl511. Epub 2006 Oct 10. Bioinformatics. 2007. PMID: 17032678

9

Modeling regulatory networks with weight matrices.

Weaver DC, Workman CT, Stormo GD. Weaver DC, et al. Among authors: workman ct. Pac Symp Biocomput. 1999:112-23. doi: 10.1142/9789814447300_0011. Pac Symp Biocomput. 1999. PMID: 10380190 Free article.

10

Natural genetic variation impacts expression levels of coding, non-coding, and antisense transcripts in fission yeast.

Clément-Ziza M, Marsellach FX, Codlin S, Papadakis MA, Reinhardt S, Rodríguez-López M, Martin S, Marguerat S, Schmidt A, Lee E, Workman CT, Bähler J, Beyer A. Clément-Ziza M, et al. Among authors: workman ct. Mol Syst Biol. 2014 Nov 28;10(11):764. doi: 10.15252/msb.20145123. Mol Syst Biol. 2014. PMID: 25432776 Free PMC article.

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