Bodén M - Search Results

1

Detecting and sorting targeting peptides with neural networks and support vector machines.

Hawkins J, Bodén M. Hawkins J, et al. Among authors: boden m. J Bioinform Comput Biol. 2006 Feb;4(1):1-18. doi: 10.1142/s0219720006001771. J Bioinform Comput Biol. 2006. PMID: 16568539

2

Prediction of subcellular localization using sequence-biased recurrent networks.

Bodén M, Hawkins J. Bodén M, et al. Bioinformatics. 2005 May 15;21(10):2279-86. doi: 10.1093/bioinformatics/bti372. Epub 2005 Mar 3. Bioinformatics. 2005. PMID: 15746276

3

Improved access to sequential motifs: a note on the architectural bias of recurrent networks.

Bodén M, Hawkins J. Bodén M, et al. IEEE Trans Neural Netw. 2005 Mar;16(2):491-4. doi: 10.1109/TNN.2005.844086. IEEE Trans Neural Netw. 2005. PMID: 15787155 Free article.

4

Prediction of protein continuum secondary structure with probabilistic models based on NMR solved structures.

Bodén M, Yuan Z, Bailey TL. Bodén M, et al. BMC Bioinformatics. 2006 Feb 14;7:68. doi: 10.1186/1471-2105-7-68. BMC Bioinformatics. 2006. PMID: 16478545 Free PMC article.

5

Identifying sequence regions undergoing conformational change via predicted continuum secondary structure.

Bodén M, Bailey TL. Bodén M, et al. Bioinformatics. 2006 Aug 1;22(15):1809-14. doi: 10.1093/bioinformatics/btl198. Epub 2006 May 23. Bioinformatics. 2006. PMID: 16720586

6

STAR: predicting recombination sites from amino acid sequence.

Bauer DC, Bodén M, Thier R, Gillam EM. Bauer DC, et al. Among authors: boden m. BMC Bioinformatics. 2006 Oct 8;7:437. doi: 10.1186/1471-2105-7-437. BMC Bioinformatics. 2006. PMID: 17026775 Free PMC article.

7

The applicability of recurrent neural networks for biological sequence analysis.

Hawkins J, Bodén M. Hawkins J, et al. Among authors: boden m. IEEE/ACM Trans Comput Biol Bioinform. 2005 Jul-Sep;2(3):243-53. doi: 10.1109/TCBB.2005.44. IEEE/ACM Trans Comput Biol Bioinform. 2005. PMID: 17044187

8

Predicting nuclear localization.

Hawkins J, Davis L, Bodén M. Hawkins J, et al. Among authors: boden m. J Proteome Res. 2007 Apr;6(4):1402-9. doi: 10.1021/pr060564n. Epub 2007 Feb 24. J Proteome Res. 2007. PMID: 17319708

9

Identifying novel peroxisomal proteins.

Hawkins J, Mahony D, Maetschke S, Wakabayashi M, Teasdale RD, Bodén M. Hawkins J, et al. Among authors: boden m. Proteins. 2007 Nov 15;69(3):606-16. doi: 10.1002/prot.21420. Proteins. 2007. PMID: 17636571

10

Determining nucleolar association from sequence by leveraging protein-protein interactions.

Bodén M, Teasdale RD. Bodén M, et al. J Comput Biol. 2008 Apr;15(3):291-304. doi: 10.1089/cmb.2007.0163. J Comput Biol. 2008. PMID: 18333760

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