McLaughlin WA - Search Results

1

Computational analysis and prediction of the binding motif and protein interacting partners of the Abl SH3 domain.

Hou T, Chen K, McLaughlin WA, Lu B, Wang W. Hou T, et al. Among authors: mclaughlin wa. PLoS Comput Biol. 2006 Jan;2(1):e1. doi: 10.1371/journal.pcbi.0020001. Epub 2006 Jan 27. PLoS Comput Biol. 2006. PMID: 16446784 Free PMC article.

2

Prediction of binding sites of peptide recognition domains: an application on Grb2 and SAP SH2 domains.

McLaughlin WA, Hou T, Wang W. McLaughlin WA, et al. J Mol Biol. 2006 Apr 7;357(4):1322-34. doi: 10.1016/j.jmb.2006.01.005. Epub 2006 Jan 26. J Mol Biol. 2006. PMID: 16476443

3

Characterization of domain-peptide interaction interface: a generic structure-based model to decipher the binding specificity of SH3 domains.

Hou T, Xu Z, Zhang W, McLaughlin WA, Case DA, Xu Y, Wang W. Hou T, et al. Among authors: mclaughlin wa. Mol Cell Proteomics. 2009 Apr;8(4):639-49. doi: 10.1074/mcp.M800450-MCP200. Epub 2008 Nov 20. Mol Cell Proteomics. 2009. PMID: 19023120 Free PMC article.

4

Prediction of binding affinities between the human amphiphysin-1 SH3 domain and its peptide ligands using homology modeling, molecular dynamics and molecular field analysis.

Hou T, McLaughlin W, Lu B, Chen K, Wang W. Hou T, et al. J Proteome Res. 2006 Jan;5(1):32-43. doi: 10.1021/pr0502267. J Proteome Res. 2006. PMID: 16396493

5

On the detection of functionally coherent groups of protein domains with an extension to protein annotation.

McLaughlin WA, Chen K, Hou T, Wang W. McLaughlin WA, et al. BMC Bioinformatics. 2007 Oct 16;8:390. doi: 10.1186/1471-2105-8-390. BMC Bioinformatics. 2007. PMID: 17937820 Free PMC article.

6

Evaluating the potency of HIV-1 protease drugs to combat resistance.

Hou T, McLaughlin WA, Wang W. Hou T, et al. Among authors: mclaughlin wa. Proteins. 2008 May 15;71(3):1163-74. doi: 10.1002/prot.21808. Proteins. 2008. PMID: 18004760 Free PMC article.

7

Entropic contributions and the influence of the hydrophobic environment in promiscuous protein-protein association.

Chang CE, McLaughlin WA, Baron R, Wang W, McCammon JA. Chang CE, et al. Among authors: mclaughlin wa. Proc Natl Acad Sci U S A. 2008 May 27;105(21):7456-61. doi: 10.1073/pnas.0800452105. Epub 2008 May 21. Proc Natl Acad Sci U S A. 2008. PMID: 18495919 Free PMC article.

8

The identification of novel cyclic AMP-dependent protein kinase anchoring proteins using bioinformatic filters and peptide arrays.

McLaughlin WA, Hou T, Taylor SS, Wang W. McLaughlin WA, et al. Protein Eng Des Sel. 2011 Mar;24(3):333-9. doi: 10.1093/protein/gzq106. Epub 2010 Nov 29. Protein Eng Des Sel. 2011. PMID: 21115539 Free PMC article.

9

Statistical models for discerning protein structures containing the DNA-binding helix-turn-helix motif.

McLaughlin WA, Berman HM. McLaughlin WA, et al. J Mol Biol. 2003 Jun 27;330(1):43-55. doi: 10.1016/s0022-2836(03)00532-1. J Mol Biol. 2003. PMID: 12818201

10

A structure-based method for identifying DNA-binding proteins and their sites of DNA-interaction.

McLaughlin WA, Kulp DW, de la Cruz J, Lu XJ, Lawson CL, Berman HM. McLaughlin WA, et al. J Struct Funct Genomics. 2004;5(4):255-65. doi: 10.1007/s10969-005-4902-1. J Struct Funct Genomics. 2004. PMID: 15704013

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