Yli-Harja O - Search Results

1

Global gene expression profile of human cord blood-derived CD133+ cells.

Jaatinen T, Hemmoranta H, Hautaniemi S, Niemi J, Nicorici D, Laine J, Yli-Harja O, Partanen J. Jaatinen T, et al. Stem Cells. 2006 Mar;24(3):631-41. doi: 10.1634/stemcells.2005-0185. Epub 2005 Oct 6. Stem Cells. 2006. PMID: 16210406

2

Transcriptional profiling reflects shared and unique characters for CD34+ and CD133+ cells.

Hemmoranta H, Hautaniemi S, Niemi J, Nicorici D, Laine J, Yli-Harja O, Partanen J, Jaatinen T. Hemmoranta H, et al. Stem Cells Dev. 2006 Dec;15(6):839-51. doi: 10.1089/scd.2006.15.839. Stem Cells Dev. 2006. PMID: 17253947

3

Finding large domains of similarly expressed genes. A novel method using the MDL principle and the recursive segmentation procedure.

Nicorici D, Yli-Harja O, Astola J. Nicorici D, et al. IEEE Eng Med Biol Mag. 2006 Jan-Feb;25(1):82-9. doi: 10.1109/memb.2006.1578667. IEEE Eng Med Biol Mag. 2006. PMID: 16485395 No abstract available.

4

Differential gene expression in non-malignant tumour microenvironment is associated with outcome in follicular lymphoma patients treated with rituximab and CHOP.

Harjunpää A, Taskinen M, Nykter M, Karjalainen-Lindsberg ML, Nyman H, Monni O, Hemmer S, Yli-Harja O, Hautaniemi S, Meri S, Leppä S. Harjunpää A, et al. Br J Haematol. 2006 Oct;135(1):33-42. doi: 10.1111/j.1365-2141.2006.06255.x. Epub 2006 Aug 22. Br J Haematol. 2006. PMID: 16925574 Free article.

5

A novel strategy for microarray quality control using Bayesian networks.

Hautaniemi S, Edgren H, Vesanen P, Wolf M, Järvinen AK, Yli-Harja O, Astola J, Kallioniemi O, Monni O. Hautaniemi S, et al. Bioinformatics. 2003 Nov 1;19(16):2031-8. doi: 10.1093/bioinformatics/btg275. Bioinformatics. 2003. PMID: 14594707

6

RMBNToolbox: random models for biochemical networks.

Aho T, Smolander OP, Niemi J, Yli-Harja O. Aho T, et al. BMC Syst Biol. 2007 May 24;1:22. doi: 10.1186/1752-0509-1-22. BMC Syst Biol. 2007. PMID: 17524136 Free PMC article.

7

CGH-Plotter: MATLAB toolbox for CGH-data analysis.

Autio R, Hautaniemi S, Kauraniemi P, Yli-Harja O, Astola J, Wolf M, Kallioniemi A. Autio R, et al. Bioinformatics. 2003 Sep 1;19(13):1714-5. doi: 10.1093/bioinformatics/btg230. Bioinformatics. 2003. PMID: 15593402

8

Relationships between probabilistic Boolean networks and dynamic Bayesian networks as models of gene regulatory networks.

Lähdesmäki H, Hautaniemi S, Shmulevich I, Yli-Harja O. Lähdesmäki H, et al. Signal Processing. 2006 Apr;86(4):814-834. doi: 10.1016/j.sigpro.2005.06.008. Signal Processing. 2006. PMID: 17415411 Free PMC article.

9

Analysis of signaling pathways in 90 cancer cell lines by protein lysate array.

Mendes KN, Nicorici D, Cogdell D, Tabus I, Yli-Harja O, Guerra R, Hamilton SR, Zhang W. Mendes KN, et al. J Proteome Res. 2007 Jul;6(7):2753-67. doi: 10.1021/pr070184h. Epub 2007 Jun 12. J Proteome Res. 2007. PMID: 17564428

10

Dissection of signaling pathways in fourteen breast cancer cell lines using reverse-phase protein lysate microarray.

Akkiprik M, Nicorici D, Cogdell D, Jia YJ, Hategan A, Tabus I, Yli-Harja O, Y D, Sahin A, Zhang W. Akkiprik M, et al. Technol Cancer Res Treat. 2006 Dec;5(6):543-51. doi: 10.1177/153303460600500601. Technol Cancer Res Treat. 2006. PMID: 17121430 Free article.

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