Marti-Renom MA - Search Results

1

The C-type lectin fold as an evolutionary solution for massive sequence variation.

McMahon SA, Miller JL, Lawton JA, Kerkow DE, Hodes A, Marti-Renom MA, Doulatov S, Narayanan E, Sali A, Miller JF, Ghosh P. McMahon SA, et al. Nat Struct Mol Biol. 2005 Oct;12(10):886-92. doi: 10.1038/nsmb992. Epub 2005 Sep 18. Nat Struct Mol Biol. 2005. PMID: 16170324

2

Variable gap penalty for protein sequence-structure alignment.

Madhusudhan MS, Marti-Renom MA, Sanchez R, Sali A. Madhusudhan MS, et al. Protein Eng Des Sel. 2006 Mar;19(3):129-33. doi: 10.1093/protein/gzj005. Epub 2006 Jan 19. Protein Eng Des Sel. 2006. PMID: 16423846

3

Refinement of protein structures by iterative comparative modeling and CryoEM density fitting.

Topf M, Baker ML, Marti-Renom MA, Chiu W, Sali A. Topf M, et al. J Mol Biol. 2006 Apr 14;357(5):1655-68. doi: 10.1016/j.jmb.2006.01.062. Epub 2006 Feb 2. J Mol Biol. 2006. PMID: 16490207

4

Localization of binding sites in protein structures by optimization of a composite scoring function.

Rossi A, Marti-Renom MA, Sali A. Rossi A, et al. Protein Sci. 2006 Oct;15(10):2366-80. doi: 10.1110/ps.062247506. Epub 2006 Sep 8. Protein Sci. 2006. PMID: 16963645 Free PMC article.

5

Alignment of protein sequences by their profiles.

Marti-Renom MA, Madhusudhan MS, Sali A. Marti-Renom MA, et al. Protein Sci. 2004 Apr;13(4):1071-87. doi: 10.1110/ps.03379804. Protein Sci. 2004. PMID: 15044736 Free PMC article.

6

Alignment of multiple protein structures based on sequence and structure features.

Madhusudhan MS, Webb BM, Marti-Renom MA, Eswar N, Sali A. Madhusudhan MS, et al. Protein Eng Des Sel. 2009 Sep;22(9):569-74. doi: 10.1093/protein/gzp040. Epub 2009 Jul 8. Protein Eng Des Sel. 2009. PMID: 19587024 Free PMC article.

7

Detecting remotely related proteins by their interactions and sequence similarity.

Espadaler J, Aragüés R, Eswar N, Marti-Renom MA, Querol E, Avilés FX, Sali A, Oliva B. Espadaler J, et al. Proc Natl Acad Sci U S A. 2005 May 17;102(20):7151-6. doi: 10.1073/pnas.0500831102. Epub 2005 May 9. Proc Natl Acad Sci U S A. 2005. PMID: 15883372 Free PMC article.

8

Comparative protein structure modeling using Modeller.

Eswar N, Webb B, Marti-Renom MA, Madhusudhan MS, Eramian D, Shen MY, Pieper U, Sali A. Eswar N, et al. Curr Protoc Bioinformatics. 2006 Oct;Chapter 5:Unit-5.6. doi: 10.1002/0471250953.bi0506s15. Curr Protoc Bioinformatics. 2006. PMID: 18428767 Free PMC article.

9

Protein structure modeling for structural genomics.

Sánchez R, Pieper U, Melo F, Eswar N, Martí-Renom MA, Madhusudhan MS, Mirković N, Sali A. Sánchez R, et al. Nat Struct Biol. 2000 Nov;7 Suppl:986-90. doi: 10.1038/80776. Nat Struct Biol. 2000. PMID: 11104007 Review.

10

A composite score for predicting errors in protein structure models.

Eramian D, Shen MY, Devos D, Melo F, Sali A, Marti-Renom MA. Eramian D, et al. Protein Sci. 2006 Jul;15(7):1653-66. doi: 10.1110/ps.062095806. Epub 2006 Jun 2. Protein Sci. 2006. PMID: 16751606 Free PMC article.

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