Shea JE - Search Results

1

Reconstruction of the src-SH3 protein domain transition state ensemble using multiscale molecular dynamics simulations.

Ding F, Guo W, Dokholyan NV, Shakhnovich EI, Shea JE. Ding F, et al. Among authors: shea je. J Mol Biol. 2005 Jul 29;350(5):1035-50. doi: 10.1016/j.jmb.2005.05.017. J Mol Biol. 2005. PMID: 15982666

2

Probing the folding free energy landscape of the Src-SH3 protein domain.

Shea JE, Onuchic JN, Brooks CL 3rd. Shea JE, et al. Proc Natl Acad Sci U S A. 2002 Dec 10;99(25):16064-8. doi: 10.1073/pnas.242293099. Epub 2002 Nov 22. Proc Natl Acad Sci U S A. 2002. PMID: 12446834 Free PMC article.

3

Posttransition state desolvation of the hydrophobic core of the src-SH3 protein domain.

Guo W, Lampoudi S, Shea JE. Guo W, et al. Among authors: shea je. Biophys J. 2003 Jul;85(1):61-9. doi: 10.1016/S0006-3495(03)74454-3. Biophys J. 2003. PMID: 12829464 Free PMC article.

4

Temperature dependence of the free energy landscape of the src-SH3 protein domain.

Guo W, Lampoudi S, Shea JE. Guo W, et al. Among authors: shea je. Proteins. 2004 May 1;55(2):395-406. doi: 10.1002/prot.20053. Proteins. 2004. PMID: 15048830

5

The physics of the interactions governing folding and association of proteins.

Guo W, Shea JE, Berry RS. Guo W, et al. Among authors: shea je. Ann N Y Acad Sci. 2005 Dec;1066:34-53. doi: 10.1196/annals.1363.025. Ann N Y Acad Sci. 2005. PMID: 16533917 Review.

6

Folding landscapes of the Alzheimer amyloid-beta(12-28) peptide.

Baumketner A, Shea JE. Baumketner A, et al. Among authors: shea je. J Mol Biol. 2006 Sep 22;362(3):567-79. doi: 10.1016/j.jmb.2006.07.032. Epub 2006 Jul 21. J Mol Biol. 2006. PMID: 16930617

7

The structure of the Alzheimer amyloid beta 10-35 peptide probed through replica-exchange molecular dynamics simulations in explicit solvent.

Baumketner A, Shea JE. Baumketner A, et al. Among authors: shea je. J Mol Biol. 2007 Feb 9;366(1):275-85. doi: 10.1016/j.jmb.2006.11.015. Epub 2006 Nov 10. J Mol Biol. 2007. PMID: 17166516

8

Effects of familial Alzheimer's disease mutations on the folding nucleation of the amyloid beta-protein.

Krone MG, Baumketner A, Bernstein SL, Wyttenbach T, Lazo ND, Teplow DB, Bowers MT, Shea JE. Krone MG, et al. Among authors: shea je. J Mol Biol. 2008 Aug 1;381(1):221-8. doi: 10.1016/j.jmb.2008.05.069. Epub 2008 Jun 4. J Mol Biol. 2008. PMID: 18597778 Free PMC article.

9

The binding of thioflavin T and its neutral analog BTA-1 to protofibrils of the Alzheimer's disease Abeta(16-22) peptide probed by molecular dynamics simulations.

Wu C, Wang Z, Lei H, Duan Y, Bowers MT, Shea JE. Wu C, et al. Among authors: shea je. J Mol Biol. 2008 Dec 19;384(3):718-29. doi: 10.1016/j.jmb.2008.09.062. Epub 2008 Oct 7. J Mol Biol. 2008. PMID: 18851978 Free PMC article.

10

The effect of surface tethering on the folding of the src-SH3 protein domain.

Zhuang Z, Jewett AI, Soto P, Shea JE. Zhuang Z, et al. Among authors: shea je. Phys Biol. 2009 Feb 10;6(1):015004. doi: 10.1088/1478-3975/6/1/015004. Phys Biol. 2009. PMID: 19208934

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