Shakhnovich EI - Search Results

1

Reconstruction of the src-SH3 protein domain transition state ensemble using multiscale molecular dynamics simulations.

Ding F, Guo W, Dokholyan NV, Shakhnovich EI, Shea JE. Ding F, et al. Among authors: shakhnovich ei. J Mol Biol. 2005 Jul 29;350(5):1035-50. doi: 10.1016/j.jmb.2005.05.017. J Mol Biol. 2005. PMID: 15982666

2

Molecular dynamics simulation of the SH3 domain aggregation suggests a generic amyloidogenesis mechanism.

Ding F, Dokholyan NV, Buldyrev SV, Stanley HE, Shakhnovich EI. Ding F, et al. Among authors: shakhnovich ei. J Mol Biol. 2002 Dec 6;324(4):851-7. doi: 10.1016/s0022-2836(02)01112-9. J Mol Biol. 2002. PMID: 12460582

3

Thermodynamics and folding kinetics analysis of the SH3 domain form discrete molecular dynamics.

Borreguero JM, Dokholyan NV, Buldyrev SV, Shakhnovich EI, Stanley HE. Borreguero JM, et al. Among authors: shakhnovich ei. J Mol Biol. 2002 May 3;318(3):863-76. doi: 10.1016/S0022-2836(02)00136-5. J Mol Biol. 2002. PMID: 12054829

4

Parallel folding pathways in the SH3 domain protein.

Lam AR, Borreguero JM, Ding F, Dokholyan NV, Buldyrev SV, Stanley HE, Shakhnovich E. Lam AR, et al. J Mol Biol. 2007 Nov 9;373(5):1348-60. doi: 10.1016/j.jmb.2007.08.032. Epub 2007 Aug 22. J Mol Biol. 2007. PMID: 17900612

5

Identifying the protein folding nucleus using molecular dynamics.

Dokholyan NV, Buldyrev SV, Stanley HE, Shakhnovich EI. Dokholyan NV, et al. Among authors: shakhnovich ei. J Mol Biol. 2000 Mar 10;296(5):1183-8. doi: 10.1006/jmbi.1999.3534. J Mol Biol. 2000. PMID: 10698625 Free article.

6

Understanding hierarchical protein evolution from first principles.

Dokholyan NV, Shakhnovich EI. Dokholyan NV, et al. Among authors: shakhnovich ei. J Mol Biol. 2001 Sep 7;312(1):289-307. doi: 10.1006/jmbi.2001.4949. J Mol Biol. 2001. PMID: 11545603

7

Topological determinants of protein folding.

Dokholyan NV, Li L, Ding F, Shakhnovich EI. Dokholyan NV, et al. Among authors: shakhnovich ei. Proc Natl Acad Sci U S A. 2002 Jun 25;99(13):8637-41. doi: 10.1073/pnas.122076099. Proc Natl Acad Sci U S A. 2002. PMID: 12084924 Free PMC article.

8

Direct molecular dynamics observation of protein folding transition state ensemble.

Ding F, Dokholyan NV, Buldyrev SV, Stanley HE, Shakhnovich EI. Ding F, et al. Among authors: shakhnovich ei. Biophys J. 2002 Dec;83(6):3525-32. doi: 10.1016/S0006-3495(02)75352-6. Biophys J. 2002. PMID: 12496119 Free PMC article.

9

Functional fingerprints of folds: evidence for correlated structure-function evolution.

Shakhnovich BE, Dokholyan NV, DeLisi C, Shakhnovich EI. Shakhnovich BE, et al. Among authors: shakhnovich ei. J Mol Biol. 2003 Feb 7;326(1):1-9. doi: 10.1016/s0022-2836(02)01362-1. J Mol Biol. 2003. PMID: 12547186

10

Identifying importance of amino acids for protein folding from crystal structures.

Dokholyan NV, Borreguero JM, Buldyrev SV, Ding F, Stanley HE, Shakhnovich EI. Dokholyan NV, et al. Among authors: shakhnovich ei. Methods Enzymol. 2003;374:616-38. doi: 10.1016/S0076-6879(03)74025-7. Methods Enzymol. 2003. PMID: 14696390 No abstract available.

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